MAFB

protein-coding

MAF bZIP transcription factor B, the group of Basic leucine zipper proteins

Gene summary

The protein encoded by this gene is a basic leucine zipper (bZIP) transcription factor that plays an important role in the regulation of lineage-specific hematopoiesis. The encoded nuclear protein represses ETS1-mediated transcription of erythroid-specific genes in myeloid cells. This gene contains no introns. [provided by RefSeq, Jul 2008]

Previous symbols:
  • KRML

MANE transcript

NM_005461.5

Inheritance

AD

ClinVar variants

P:27U:113B:47

Top phenotype

Duane retraction syndrome-3 (DURS3) with or without deafness

gnomAD constraint

pLI —, LoF o/e 0

Max pathogenic AF

—

Genomic locus

chr20:40,685,848-40,689,236

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~3.4 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

multicentric carpo-tarsal osteolysis with or without nephropathySTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0008152

Submitter: PanelApp Australia

Duane retraction syndrome 3 with or without deafnessMODERATE

Inheritance Pattern: AD

Disease ID:MONDO:0014880

Submitter: Ambry Genetics

Duane retraction syndrome 3 with or without deafnessSTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0014880

Submitter: PanelApp Australia

multicentric carpo-tarsal osteolysis with or without nephropathyDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0008152

Submitter: G2P

Duane retraction syndrome 3 with or without deafnessSTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0014880

Submitter: Labcorp Genetics (formerly Invitae)

Duane retraction syndrome 3 with or without deafnessSTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0014880

Submitter: G2P

multicentric carpo-tarsal osteolysis with or without nephropathyMODERATE

Inheritance Pattern: AD

Disease ID:MONDO:0008152

Submitter: Ambry Genetics

multicentric carpo-tarsal osteolysis with or without nephropathySTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0008152

Submitter: Labcorp Genetics (formerly Invitae)

multicentric carpo-tarsal osteolysis with or without nephropathySUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0008152

Submitter: Orphanet

Duane retraction syndromeSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0007473

Submitter: Orphanet

Clinical Genomic Database (CGD)

Duane retraction syndrome-3 (DURS3) with or without deafnessAD

Manifestation: Audiologic/Otolaryngologic; Craniofacial; Musculoskeletal; Neurologic; Renal

Intervention: Audiologic/Otolaryngologic

Rationale: Early recognition and treatment of hearing impairment may improve outcomes, including speech and language development

Comments: Individuals with Multicentric carpotarsal osteolysis frequently have progressive renal disease

Refs: 22387013; 27181683Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to MAFB variants in ClinVar

13 Conditions Cataloged
not providedTotal: 114
Multicentric carpo-tarsal osteolysis with or without nephropathyTotal: 56
Inborn genetic diseasesTotal: 38
Duane retraction syndrome 3 with or without deafnessTotal: 37
MAFB-related disorderTotal: 29
not specifiedTotal: 11
Duane retraction syndrome 2Total: 3
Duane syndrome type 1Total: 3

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_005461.5. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
14
clinvar
24
clinvar
5
clinvar
43
missense
8
clinvar
11
clinvar
99
clinvar
14
clinvar
4
clinvar
136
nonsense
1
clinvar
1
clinvar
2
start loss
0
frameshift
4
clinvar
2
clinvar
6
splice donor/acceptor (+/-2bp)
0
Total1314113389187

Highest pathogenic variant AF is 6.8733436e-7

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 2 of 2 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_005461.5RefSeqNP_005452.21MANE Select
ENST00000373313.3EnsemblENSP00000362410.21MANE Select

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
mafbaDanio rerio

Structure: blood cell

Quality: decreased amount

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Tacrolimus/Cyclosporine Pathway, Pharmacodynamics
  • Ectoderm Differentiation

Biological Process

  • regulation of transcription, DNA-templated
  • segment specification
  • sensory organ development
  • respiratory gaseous exchange
  • rhombomere 5 development

Molecular Function

  • RNA polymerase II proximal promoter sequence-specific DNA binding
  • DNA-binding transcription factor activity, RNA polymerase II-specific
  • DNA-binding transcription factor activity
  • protein binding
  • transcription factor binding

Cellular Component

  • nucleus
  • transcription factor complex

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000373313
Coding exons
1
Length
3393
Individuals with no LoFs
0
Homozygous LoFs
0
Heterozygous LoFs
0
Defined
0
p
0.00
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense2.171071910.5590.000008732093
Missense (PolyPhen)2469.2530.34655737
Synonymous-0.009298887.91.000.00000418652
Loss of Function2.5407.540.003.26e-781

Population LoF Frequency

PopulationCAFp-valueStatus
African00.0absent
Latino/Admixed American00.0absent
Ashkenazi Jewish00.0absent
East Asian00.0absent
Finnish00.0absent
European (Non-Finnish)00.0absent
South Asian00.0absent
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Acts as a transcriptional activator or repressor (PubMed:27181683). Plays a pivotal role in regulating lineage- specific hematopoiesis by repressing ETS1-mediated transcription of erythroid-specific genes in myeloid cells. Required for monocytic, macrophage, osteoclast, podocyte and islet beta cell differentiation. Involved in renal tubule survival and F4/80 maturation. Activates the insulin and glucagon promoters. Together with PAX6, transactivates weakly the glucagon gene promoter through the G1 element. SUMO modification controls its transcriptional activity and ability to specify macrophage fate. Binds element G1 on the glucagon promoter (By similarity). Involved either as an oncogene or as a tumor suppressor, depending on the cell context. {ECO:0000250|UniProtKB:P54841, ECO:0000269|PubMed:19143053, ECO:0000269|PubMed:27181683}.;
Disease
DISEASE: Multicentric carpotarsal osteolysis syndrome (MCTO) [MIM:166300]: A rare skeletal disorder, usually presenting in early childhood with a clinical picture mimicking juvenile rheumatoid arthritis. Progressive destruction of the carpal and tarsal bone usually occurs and other bones may also be involved. Chronic renal failure is a frequent component of the syndrome. Mental retardation and minor facial anomalies have been noted in some patients. {ECO:0000269|PubMed:22387013}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Duane retraction syndrome 3 with or without deafness (DURS3) [MIM:617041]: A form of Duane retraction syndrome, a congenital eye movement disorder characterized by a failure of cranial nerve VI (the abducens nerve) to develop normally, resulting in restriction or absence of abduction, adduction or both, narrowing of the palpebral fissure, and retraction of the globe on attempted adduction. Undiagnosed in children, it can lead to amblyopia, a permanent uncorrectable loss of vision. Some DURS3 patients manifest sensorineural hearing loss. {ECO:0000269|PubMed:27181683}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.260

Intolerance Scores

RVIS EVS
-0.14
RVIS percentile EVS
42.88

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Indispensability pred.
E
Indispensability score
0.970

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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