MAK

protein-coding

male germ cell associated kinase

Gene summary

The product of this gene is a serine/threonine protein kinase related to kinases involved in cell cycle regulation. Studies of the mouse and rat homologs have localized the kinase to the chromosomes during meiosis in spermatogenesis, specifically to the synaptonemal complex that exists while homologous chromosomes are paired. Mutations in this gene have been associated with ciliary defects resulting in retinitis pigmentosa 62. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]

MANE transcript

NM_001242957.3

Inheritance

AR, AD

ClinVar variants

P:109U:250B:177

Top phenotype

Retinitis pigmentosa 62

gnomAD constraint

pLI —, LoF o/e 0.89

Max pathogenic AF

—

Genomic locus

chr6:10,762,723-10,838,553

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~75.8 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

retinitis pigmentosa 62STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0013611

Submitter: Labcorp Genetics (formerly Invitae)

retinitis pigmentosaSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0019200

Submitter: Orphanet

retinitis pigmentosa 62DEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0013611

Submitter: G2P

retinitis pigmentosa 62STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0013611

Submitter: PanelApp Australia

retinitis pigmentosa 62MODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0013611

Submitter: Ambry Genetics

MAK-related retinopathyDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0700229

Submitter: ClinGen

*MAK* was first reported in relation to autosomal recessive retinopathy in 2011 (Ozgul et al., PMID: 21835304; Stone et al., PMID: 22110072; Tucker et al., PMID: 21825139). The initial reports described patients with adult-onset retinitis pigmentosa, with some cases described as sectoral retinitis pigmentosa. Patients typically presented with classic symptoms and signs of retinitis pigmentosa, including nyctalopia, constriction of the visual field, and pigmentary changes in the midperipheral retina. Stone et al. (2011; PMID: 22110072) describe a pattern of early superotemporal visual field loss. MAK-related retinopathy appears to cause non-syndromic retinal disease, and no associated extra-ocular features were identified in a cohort specifically screened for potential syndromic features (van Huet et al., 2015; PMID: 25385675). The *MAK* gene is associated with the phenotype retinitis pigmentosa (or rod-cone dystrophy) (MIM: 614181; ORPHA:791; HP:0000510). However, there is at least one report of a proband with a homozygous MAK variant and a diagnosis of cone-rod dystrophy and bull's eye maculopathy (PMID: 33921607). For consistency with the Retina GCEP curations, the disease entity MAK-related retinopathy has been selected. Thirteen distinct variants (missense, nonsense, frameshift, Alu repeat insertion) that have been reported in 31 probands in 7 publications (PMIDs: 21835304, 21825139, 22110072, 25255364, 33542393, 29781741, 33921607) are included in this curation. The most frequently reported variant is an insertion of a 353 base pair Alu repeat in exon 9 of *MAK* (often referred to as MAK-Alu insertion). This was first described by Tucker et al. (2011: PMID: 21825139) who identified it in multiple affected individuals of Ashkenazi Jewish ancestries in a homozygous state. Notably, the MAK-Alu insertion is enriched in the Ashkenazi Jewish population (estimated carrier frequency of 1/55), and haplotype analysis indicated a founder effect (PMIDs: 25255364, 22110072). More evidence is available in the literature, but the maximum score for genetic evidence (12 pts.) has been reached. The mechanism of pathogenicity is known to be loss-of-function (PMID: 34518651). This gene-disease association is also supported by experimental evidence (e.g. animal models, expression studies, protein interactions, animal models, rescue experiments, etc.) (PMIDs: 21825139, 21148103, 34518651). The *MAK* (male germ cell-associated kinase) gene is important for long-term photoreceptor survival and serves as a negative regulator of cilia length (PMIDs: 21148103, 34518651). *MAK* is expressed in the photoreceptor cells, especially in the outer nuclear layer, axons, and inner segments (PMID: 21825139). There are two *MAK* transcripts expressed in the retina, one of which is a retina-specific transcript that contains a 75 base pair exon (exon 12) that is not present in the canonical transcript (PMID: 21825139). Mak is expressed in the developing mouse retina, and *Mak* knockout mice have photoreceptor degeneration (PMID: 21148103). The *mak* knockdown zebrafish also show signs of vision impairment and elongated cilia length, both of which can be rescued or partially rescued by injection of human *MAK* mRNA (PMID: 34518651). In addition, iPSC studies show rescue of the cilia defect in patient-derived fibroblasts when transduced with viral vectors driving canonical or retinal MAK expression (PMID: 34518651). More experimental evidence is available in the literature, but the maximum score for experimental evidence (6 pts.) has been reached. In summary, *MAK* is definitively associated with autosomal recessive MAK-related retinopathy. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. This classification was approved by the ClinGen Retina GCEP on the meeting date March 2, 2023 (SOP Version 9).

Clinical Genomic Database (CGD)

Retinitis pigmentosa 62AR

Manifestation: Ophthalmologic

Intervention: General

Rationale: Genetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testing

Refs: 21835304Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to MAK variants in ClinVar

11 Conditions Cataloged
not providedTotal: 600
Inborn genetic diseasesTotal: 74
not specifiedTotal: 73
Retinal dystrophyTotal: 53
MAK-related disorderTotal: 45
Retinitis pigmentosa 62Total: 37
MAK-related disordersTotal: 33
Retinitis pigmentosaTotal: 23

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_001242957.3. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
6
clinvar
154
clinvar
2
clinvar
162
missense
1
clinvar
16
clinvar
233
clinvar
20
clinvar
1
clinvar
271
nonsense
17
clinvar
6
clinvar
3
clinvar
26
start loss
1
clinvar
1
frameshift
29
clinvar
25
clinvar
5
clinvar
59
splice donor/acceptor (+/-2bp)
1
clinvar
14
clinvar
2
clinvar
17
Total48612501743536

Highest pathogenic variant AF is 0.000051433955

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 19 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_001242957.3RefSeqNP_001229886.114MANE Select
ENST00000354489.7EnsemblENSP00000346484.314MANE Select
NM_001242385.2RefSeqNP_001229314.112Standard
NM_001377262.1RefSeqNP_001364191.111Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Coregulation of Androgen receptor activity

Biological Process

  • protein phosphorylation
  • multicellular organism development
  • spermatogenesis
  • regulation of gene expression
  • cell differentiation

Molecular Function

  • transcription coactivator activity
  • protein kinase activity
  • protein serine/threonine kinase activity
  • protein binding
  • ATP binding

Cellular Component

  • photoreceptor outer segment
  • photoreceptor inner segment
  • nucleus
  • cytoplasm
  • centrosome

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000313243
Coding exons
13
Length
75809
Individuals with no LoFs
125637
Homozygous LoFs
0
Heterozygous LoFs
111
Defined
125748
p
0.000441
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.4003093290.9380.00001774078
Missense (PolyPhen)102114.210.893081461
Synonymous1.041041180.8790.000006791150
Loss of Function0.5993033.80.8890.00000163429

Population LoF Frequency

PopulationCAFp-valueStatus
African0.000570.00055rare
Latino/Admixed American0.000520.00052rare
Ashkenazi Jewish00.0absent
East Asian0.000820.00082rare
Finnish0.0000920.000092rare
European (Non-Finnish)0.000450.00045rare
South Asian0.000460.00046rare
Other0.000330.00033rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Essential for the regulation of ciliary length and required for the long-term survival of photoreceptors (By similarity). Phosphorylates FZR1 in a cell cycle-dependent manner. Plays a role in the transcriptional coactivation of AR. Could play an important function in spermatogenesis. May play a role in chromosomal stability in prostate cancer cells. {ECO:0000250, ECO:0000269|PubMed:12084720, ECO:0000269|PubMed:16951154, ECO:0000269|PubMed:21986944}.;
Disease
DISEASE: Retinitis pigmentosa 62 (RP62) [MIM:614181]: A retinal dystrophy belonging to the group of pigmentary retinopathies. Retinitis pigmentosa is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. {ECO:0000269|PubMed:21825139, ECO:0000269|PubMed:21835304}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.100

Intolerance Scores

LoFtool
0.962
RVIS EVS
-0.36
RVIS percentile EVS
29.31

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Indispensability pred.
E
Indispensability score
0.672

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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