MAK
protein-codingmale germ cell associated kinase
Gene summary
The product of this gene is a serine/threonine protein kinase related to kinases involved in cell cycle regulation. Studies of the mouse and rat homologs have localized the kinase to the chromosomes during meiosis in spermatogenesis, specifically to the synaptonemal complex that exists while homologous chromosomes are paired. Mutations in this gene have been associated with ciliary defects resulting in retinitis pigmentosa 62. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~75.8 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AR
Disease ID:MONDO:0013611
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:0019200
Submitter: Orphanet
Inheritance Pattern: AR
Disease ID:MONDO:0013611
Submitter: G2P
Inheritance Pattern: AR
Disease ID:MONDO:0013611
Submitter: PanelApp Australia
Inheritance Pattern: AR
Disease ID:MONDO:0013611
Submitter: Ambry Genetics
Inheritance Pattern: AR
Disease ID:MONDO:0700229
Submitter: ClinGen
*MAK* was first reported in relation to autosomal recessive retinopathy in 2011 (Ozgul et al., PMID: 21835304; Stone et al., PMID: 22110072; Tucker et al., PMID: 21825139). The initial reports described patients with adult-onset retinitis pigmentosa, with some cases described as sectoral retinitis pigmentosa. Patients typically presented with classic symptoms and signs of retinitis pigmentosa, including nyctalopia, constriction of the visual field, and pigmentary changes in the midperipheral retina. Stone et al. (2011; PMID: 22110072) describe a pattern of early superotemporal visual field loss. MAK-related retinopathy appears to cause non-syndromic retinal disease, and no associated extra-ocular features were identified in a cohort specifically screened for potential syndromic features (van Huet et al., 2015; PMID: 25385675). The *MAK* gene is associated with the phenotype retinitis pigmentosa (or rod-cone dystrophy) (MIM: 614181; ORPHA:791; HP:0000510). However, there is at least one report of a proband with a homozygous MAK variant and a diagnosis of cone-rod dystrophy and bull's eye maculopathy (PMID: 33921607). For consistency with the Retina GCEP curations, the disease entity MAK-related retinopathy has been selected. Thirteen distinct variants (missense, nonsense, frameshift, Alu repeat insertion) that have been reported in 31 probands in 7 publications (PMIDs: 21835304, 21825139, 22110072, 25255364, 33542393, 29781741, 33921607) are included in this curation. The most frequently reported variant is an insertion of a 353 base pair Alu repeat in exon 9 of *MAK* (often referred to as MAK-Alu insertion). This was first described by Tucker et al. (2011: PMID: 21825139) who identified it in multiple affected individuals of Ashkenazi Jewish ancestries in a homozygous state. Notably, the MAK-Alu insertion is enriched in the Ashkenazi Jewish population (estimated carrier frequency of 1/55), and haplotype analysis indicated a founder effect (PMIDs: 25255364, 22110072). More evidence is available in the literature, but the maximum score for genetic evidence (12 pts.) has been reached. The mechanism of pathogenicity is known to be loss-of-function (PMID: 34518651). This gene-disease association is also supported by experimental evidence (e.g. animal models, expression studies, protein interactions, animal models, rescue experiments, etc.) (PMIDs: 21825139, 21148103, 34518651). The *MAK* (male germ cell-associated kinase) gene is important for long-term photoreceptor survival and serves as a negative regulator of cilia length (PMIDs: 21148103, 34518651). *MAK* is expressed in the photoreceptor cells, especially in the outer nuclear layer, axons, and inner segments (PMID: 21825139). There are two *MAK* transcripts expressed in the retina, one of which is a retina-specific transcript that contains a 75 base pair exon (exon 12) that is not present in the canonical transcript (PMID: 21825139). Mak is expressed in the developing mouse retina, and *Mak* knockout mice have photoreceptor degeneration (PMID: 21148103). The *mak* knockdown zebrafish also show signs of vision impairment and elongated cilia length, both of which can be rescued or partially rescued by injection of human *MAK* mRNA (PMID: 34518651). In addition, iPSC studies show rescue of the cilia defect in patient-derived fibroblasts when transduced with viral vectors driving canonical or retinal MAK expression (PMID: 34518651). More experimental evidence is available in the literature, but the maximum score for experimental evidence (6 pts.) has been reached. In summary, *MAK* is definitively associated with autosomal recessive MAK-related retinopathy. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. This classification was approved by the ClinGen Retina GCEP on the meeting date March 2, 2023 (SOP Version 9).
Clinical Genomic Database (CGD)
Manifestation: Ophthalmologic
Intervention: General
Rationale: Genetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testing
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to MAK variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_001242957.3. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 6 | 154 | 2 | 162 | ||
| missense | 1 | 16 | 233 | 20 | 1 | 271 |
| nonsense | 17 | 6 | 3 | 26 | ||
| start loss | 1 | 1 | ||||
| frameshift | 29 | 25 | 5 | 59 | ||
| splice donor/acceptor (+/-2bp) | 1 | 14 | 2 | 17 | ||
| Total | 48 | 61 | 250 | 174 | 3 | 536 |
Highest pathogenic variant AF is 0.000051433955
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_001229886.1 | 14 | MANE Select | |
| Ensembl | ENSP00000346484.3 | 14 | MANE Select | |
| RefSeq | NP_001229314.1 | 12 | Standard | |
| RefSeq | NP_001364191.1 | 11 | Standard |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Coregulation of Androgen receptor activity
Biological Process
- protein phosphorylation
- multicellular organism development
- spermatogenesis
- regulation of gene expression
- cell differentiation
Molecular Function
- transcription coactivator activity
- protein kinase activity
- protein serine/threonine kinase activity
- protein binding
- ATP binding
Cellular Component
- photoreceptor outer segment
- photoreceptor inner segment
- nucleus
- cytoplasm
- centrosome
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000313243
- Coding exons
- 13
- Length
- 75809
- Individuals with no LoFs
- 125637
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 111
- Defined
- 125748
- p
- 0.000441
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 0.400 | 309 | 329 | 0.938 | 0.0000177 | 4078 |
| Missense (PolyPhen) | 102 | 114.21 | 0.89308 | 1461 | ||
| Synonymous | 1.04 | 104 | 118 | 0.879 | 0.00000679 | 1150 |
| Loss of Function | 0.599 | 30 | 33.8 | 0.889 | 0.00000163 | 429 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.00057 | 0.00055 | rare |
| Latino/Admixed American | 0.00052 | 0.00052 | rare |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0.00082 | 0.00082 | rare |
| Finnish | 0.000092 | 0.000092 | rare |
| European (Non-Finnish) | 0.00045 | 0.00045 | rare |
| South Asian | 0.00046 | 0.00046 | rare |
| Other | 0.00033 | 0.00033 | rare |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Essential for the regulation of ciliary length and required for the long-term survival of photoreceptors (By similarity). Phosphorylates FZR1 in a cell cycle-dependent manner. Plays a role in the transcriptional coactivation of AR. Could play an important function in spermatogenesis. May play a role in chromosomal stability in prostate cancer cells. {ECO:0000250, ECO:0000269|PubMed:12084720, ECO:0000269|PubMed:16951154, ECO:0000269|PubMed:21986944}.;
- Disease
- DISEASE: Retinitis pigmentosa 62 (RP62) [MIM:614181]: A retinal dystrophy belonging to the group of pigmentary retinopathies. Retinitis pigmentosa is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. {ECO:0000269|PubMed:21825139, ECO:0000269|PubMed:21835304}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Recessive Scores
- pRec
- 0.100
Intolerance Scores
- LoFtool
- 0.962
- RVIS EVS
- -0.36
- RVIS percentile EVS
- 29.31
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.672
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |