MANBAL

mannosidase beta like, the group of Mannosidases type beta

Basic information

Region (hg38): 20:37289649-37317260

Links

ENSG00000101363 ∙ NCBI:63905 ∙ ∙ HGNC:15799 ∙ Uniprot:Q9NQG1 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MANBAL gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MANBAL gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			9			9
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	9	0	0

Variants in MANBAL

This is a list of pathogenic ClinVar variants found in the MANBAL region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
20-37301271-C-T		not specified	Uncertain significance (Jan 22, 2024)
20-37301292-C-G		not specified	Uncertain significance (Jan 09, 2023)
20-37301309-A-C		not specified	Uncertain significance (Nov 15, 2021)
20-37301379-C-T		not specified	Uncertain significance (Jan 10, 2023)
20-37301405-C-G		not specified	Uncertain significance (Dec 27, 2023)
20-37316345-C-T		not specified	Uncertain significance (Jul 12, 2023)
20-37316365-G-C		not specified	Uncertain significance (May 01, 2022)
20-37316397-G-C		not specified	Uncertain significance (Jun 29, 2023)
20-37316410-C-T		not specified	Uncertain significance (Nov 03, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MANBAL	protein_coding	protein_coding	ENST00000373605	2	27623

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0335	0.632	125738	0	7	125745	0.0000278

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.163	49	52.3	0.936	0.00000325	536
Missense in Polyphen		17	16.895	1.0062		214
Synonymous	-0.532	26	22.8	1.14	0.00000148	185
Loss of Function	0.303	2	2.52	0.794	1.06e-7	30

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000290	0.0000290
Ashkenazi Jewish	0.00	0.00
East Asian	0.000110	0.000109
Finnish	0.00	0.00
European (Non-Finnish)	0.0000177	0.0000176
Middle Eastern	0.000110	0.000109
South Asian	0.0000654	0.0000653
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Intolerance Scores

• loftool: 0.387
• rvis_EVS: -0.1
• rvis_percentile_EVS: 46.2

Haploinsufficiency Scores

• pHI: 0.190
• hipred: N
• hipred_score: 0.398
• ghis: 0.625

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.806

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Manbal

Gene ontology

• Cellular component: integral component of membrane
• Molecular function: protein binding