MAP9-AS1

MAP9 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 4:155173525-155381694

Links

ENSG00000250910 ∙ NCBI:102724776 ∙ ∙ HGNC:56110 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MAP9-AS1 gene.

• Inborn genetic diseases (44 variants)
• not provided (8 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MAP9-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			43	5	4	52
Total	0	0	43	5	4

Variants in MAP9-AS1

This is a list of pathogenic ClinVar variants found in the MAP9-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
4-155213977-C-G		not specified	Uncertain significance (Mar 20, 2024)
4-155214003-T-C			Likely benign (Jul 10, 2018)
4-155214016-C-A		not specified	Uncertain significance (Feb 12, 2024)
4-155214054-G-C		not specified	Uncertain significance (Mar 23, 2022)
4-155214098-C-T			Benign (Aug 21, 2018)
4-155214136-T-C		not specified	Uncertain significance (Jan 17, 2023)
4-155214267-T-C		not specified	Uncertain significance (Oct 22, 2021)
4-155214305-G-A			Likely benign (Jun 05, 2018)
4-155214382-G-A		not specified	Uncertain significance (Aug 31, 2022)
4-155214433-G-A		not specified	Uncertain significance (Jun 27, 2022)
4-155214453-G-A			Benign (Mar 01, 2018)
4-155214489-G-A		not specified	Uncertain significance (Aug 28, 2023)
4-155214537-A-T		not specified	Uncertain significance (Dec 06, 2022)
4-155214578-C-A		not specified	Uncertain significance (Jul 20, 2021)
4-155214593-C-G			Benign (Mar 29, 2018)
4-155214661-G-A		not specified	Uncertain significance (Jun 16, 2024)
4-155214850-A-G		not specified	Uncertain significance (Jan 30, 2024)
4-155214917-C-T			Benign (Jun 08, 2018)
4-155214973-G-A			Likely benign (Jul 04, 2018)
4-155214986-T-G		not specified	Uncertain significance (Jun 10, 2024)
4-155215046-T-G		not specified	Uncertain significance (Feb 03, 2023)
4-155215049-C-A			Likely benign (Jul 16, 2018)
4-155215050-C-A		not specified	Uncertain significance (Dec 21, 2022)
4-155215074-A-G		not specified	Uncertain significance (Apr 12, 2024)
4-155347809-T-C		not specified	Uncertain significance (Apr 18, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP