MASTL

protein-coding

microtubule associated serine/threonine kinase like, the group of AGC family kinases

Gene summary

This gene encodes a microtubule-associated serine/threonine kinase. Mutations at this locus have been associated with autosomal dominant thrombocytopenia, also known as thrombocytopenia-2. Alternatively spliced transcript variants have been described for this locus. [provided by RefSeq, Feb 2010]

MANE transcript

NM_001172303.3

Inheritance

AD

ClinVar variants

P:1U:143B:62

Top phenotype

Thrombocytopenia 2

gnomAD constraint

pLI —, LoF o/e 0.68

Max pathogenic AF

—

Genomic locus

chr10:27,154,824-27,187,953

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~33.1 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

autosomal thrombocytopenia with normal plateletsSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0015679

Submitter: Orphanet

thrombocytopeniaLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0002049

Submitter: ClinGen

The MASTL gene encodes a serine/threonine kinase that plays a crucial role in mitosis by inhibiting protein phosphatase-2 (PP-2) B55 complexes through activation of ENSA and ARPP19. Dysregulation of MASTL has been linked to various types of cancer. In platelets, MASTL plays a cell-cycle–independent role that is the regulation of focal adhesion and actin dynamics. Indeed, MASTL inhibits PP-2 that in turn is an inhibitor of the outside-in signaling pathway downstream of αIIbβ3, and dephosphorylates critical signaling molecules during platelet activation, such as PKCζ or VASP. As a consequence, mutant gain of function MASTL induces increased αIIbβ3 activation and aberrant platelet function. A MASTL variant, c.501G>C (p.Glu167Asp), was reported in relation to thrombocytopenia in 2003 by Gandhi et al (PMID:12890928) in a large family (51 family members) with thrombocytopenia and normal platelet volume inherited in an autosomal-dominant manner. This family was previously described in 2000 by the same group. Patients showed thrombocytopenia, small and less polyploid megakaryocytes, increased neutrophil count and slightly increased TPO. In the same paper the authors mapped the genetic locus segregating with thrombocytopenia in this family: 10p11.1-p12, stating that this was the locus segregating with thrombocytopenia type 2 (THC2) (PMID:10891439). These are the only patients and the only MASTL variant described so far in patients with thrombocytopenia. However, in the same locus, Pippucci et al identified in 2010 the gene causative for THC2, that is ANKRD26 (PMID: 21211618, not curated). Patients with ANKRD26 variants show characteristics very similar to the family described with the MASTL variant that are: autosomal dominant inheritance, thrombocytopenia with normal platelet volume, small and less polyploid megakaryocytes, increased neutrophil count and slightly increased TPO. However, experimental evidenced (see below) suggest a role of MASTL in platelet formation and function. Finally, a recent publication (PMID: 37746810, not curated) described two members of a family with thrombocytopenia and normal platelet volume, in which exome sequencing identified a 1006 kb deletion in the 10p12.1. Therefore, a deletion involving both MASTL and ANKRD26 segregates with familial thrombocytopenia, which suggests that haploinsufficiency of one or both genes might be the cause. The mechanism of disorder is (probably) gain of function (PMID: 19460416). Evidence supporting this gene-disease relationship includes genetic evidences (case-level data) and experimental evidences (expression (A), function (B), functional alteration in patient cells, non-human model organism). Summary of Case Level Data: 3.1 POINTS One variant in this gene has been reported in one family in 1 publication (PMID:12890928). Affected patients show thrombocytopenia, normal platelet volume, mild bleeding, small and less polyploid megakaryocytes, increased neutrophil count and slightly increased TPO. Lod score was 6.63. Summary of Experimental Data: 4.75 POINTS Johnson et al. showed that MASTL is expressed in human hematopoietic and cancer cell lines (PMID: 19460416) (Expression A). Mochida et al. showed that MASTL phosphorylates EMSA and ARPP19. These in turn inhibit PP2A-B55. (PMID: 21164013) (Biochemical Function B). Johnson et al. demonstrated, by transient knockdown of MASTL with antisense morpholino oligomers in zebrafish, that ablation of Mastl causes thrombocytopenia suggesting that it is necessary for thrombocyte development (PMID: 19460416) (Model Systems). Drachman JG et al, cultured megakaryocytes (Mks) from CD34+ cells from patients with the MASTL p.Glu167Asp variant, they showed diminished differentiation of Mks, moreover Mks were smaller and less polyploid respect to controls (PMID: 10891439) (Functional Alteration - Patient cells). Hurtado et al. generated two mouse models, one was a conditional KO in which Mastl was knocked down only in megakaryocytes and platelets, the other was a knock-in model expressing the MASTL p.Glu167Asp variant (PMID: 30252678). KO mice showed thrombocytopenia and a reduced number of Mks. Mutant p.Glu167Asp mice showed thrombocytopenia but normal Mks differentiation, prolonged bleeding time but reduced survival after induction of pulmonary embolism or FeCl3-induced carotid artery injury. By studying platelet activation and function the authors showed normal platelet aggregation, increased αIIbβ3 activation, increased actin polymerization and impaired spreading. Moreover, there was enhanced activation of critical regulatory kinases such as protein kinase C, Src or Fak resulting in increased phosphorylation of Vasp, known to increase stress fiber and filopodia formation and of the regulatory light chain of myosin II (Mlc2), a reporter of active reorganization of the actomyosin cytoskeleton (PMID: 30252678) (Model Systems). All these findings suggest that thrombocytopenia in MASTL mutant mice is caused by aberrant platelet activation and consequent destruction, differently from patients. In summary, with a score of 7.85, we obtained moderate association of MASTL with thrombocytopenia, that however was downgraded at limited due to the fact that only one family was described with variants in MASTL and thrombocytopenia. This classification was approved by the ClinGen Hemostasis Thrombosis Working Group on ..... (SOP Version 11).

Clinical Genomic Database (CGD)

Thrombocytopenia 2AD

Manifestation: Hematologic

Intervention: Hematologic

Rationale: Individuals may have bleeding tendency, and precautions (eg, in surgical situations) may be beneficial

Refs: 10891439; 12890928; 22102272Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to MASTL variants in ClinVar

7 Conditions Cataloged
not specifiedTotal: 156
ThrombocytopeniaTotal: 46
not providedTotal: 44
MASTL-related disorderTotal: 36
Thrombocytopenia 2Total: 3
Autosomal dominant thrombocytopeniaTotal: 1
Scimitar anomaly, multiple cardiac malformations, and craniofacial and central nervous system abnormalitiesTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_001172303.3. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
7
clinvar
29
clinvar
36
missense
1
clinvar
130
clinvar
31
clinvar
2
clinvar
164
nonsense
3
clinvar
3
start loss
0
frameshift
0
splice donor/acceptor (+/-2bp)
3
clinvar
3
Total01143602206

Highest pathogenic variant AF is 0.000012398687

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 57 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_001172303.3RefSeqNP_001165774.112MANE Select
ENST00000375940.9EnsemblENSP00000365107.512MANE Select
NM_001172304.3RefSeqNP_001165775.111Standard
NM_001320756.2RefSeqNP_001307685.113Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
mastlDanio rerio

Structure: thrombocyte

Quality: decreased amount

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • MASTL Facilitates Mitotic Progression
  • Mitotic Prophase
  • M Phase
  • Cell Cycle
  • Cell Cycle, Mitotic

Biological Process

  • G2/M transition of mitotic cell cycle
  • mitotic cell cycle
  • cellular response to DNA damage stimulus
  • female meiosis II
  • peptidyl-serine phosphorylation

Molecular Function

  • protein serine/threonine kinase activity
  • ATP binding
  • kinase activity
  • protein phosphatase 2A binding

Cellular Component

  • nucleus
  • nucleoplasm
  • cytoplasm
  • centrosome
  • cleavage furrow

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000375940
Coding exons
12
Length
32101
Individuals with no LoFs
125618
Homozygous LoFs
0
Heterozygous LoFs
130
Defined
125748
p
0.000517
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.5054284580.9340.00002195839
Missense (PolyPhen)140165.190.847532187
Synonymous1.371461690.8660.000008781657
Loss of Function1.812536.90.6780.00000180483

Population LoF Frequency

PopulationCAFp-valueStatus
African0.000310.00031rare
Latino/Admixed American0.000980.00098rare
Ashkenazi Jewish0.0000990.000099rare
East Asian0.000270.00027rare
Finnish0.00220.0022notable
European (Non-Finnish)0.000240.00024rare
South Asian00.0absent
Other0.00160.0016notable

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Serine/threonine kinase that plays a key role in M phase by acting as a regulator of mitosis entry and maintenance. Acts by promoting the inactivation of protein phosphatase 2A (PP2A) during M phase: does not directly inhibit PP2A but acts by mediating phosphorylation and subsequent activation of ARPP19 and ENSA at 'Ser-62' and 'Ser-67', respectively. ARPP19 and ENSA are phosphatase inhibitors that specifically inhibit the PPP2R2D (PR55-delta) subunit of PP2A. Inactivation of PP2A during M phase is essential to keep cyclin-B1-CDK1 activity high. Following DNA damage, it is also involved in checkpoint recovery by being inhibited. Phosphorylates histone protein in vitro; however such activity is unsure in vivo. May be involved in megakaryocyte differentiation. {ECO:0000269|PubMed:12890928, ECO:0000269|PubMed:19680222, ECO:0000269|PubMed:19793917, ECO:0000269|PubMed:20538976, ECO:0000269|PubMed:20818157}.;
Disease
DISEASE: Note=Defects in MASTL may play a role in the pathogenesis of thrombocytopenia, a disorder defined by reduced number of platelets in circulating blood, resulting in the potential for increased bleeding and decreased ability for clotting. {ECO:0000269|PubMed:12890928}.;

Recessive Scores

pRec
0.111

Intolerance Scores

LoFtool
0.984
RVIS EVS
1.14
RVIS percentile EVS
92.33

Essentials

Essential (CRISPR)
E
Essential (CRISPR2)
E
Essential (gene trap)
E
Indispensability pred.
N
Indispensability score
0.0182

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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