MED27

mediator complex subunit 27, the group of Mediator complex

Basic information

Region (hg38): 9:131852928-132079867

Previous symbols: [ "CRSP8" ]

Links

ENSG00000160563NCBI:9442OMIM:605044HGNC:2377Uniprot:Q6P2C8AlphaFoldGenCCjaxSfariGnomADPubmedClinVar

Phenotypes

GenCC

Source: genCC

  • syndromic intellectual disability (Supportive), mode of inheritance: AD
  • neurodevelopmental disorder with spasticity, cataracts, and cerebellar hypoplasia (Strong), mode of inheritance: AR
  • neurodevelopmental disorder with spasticity, cataracts, and cerebellar hypoplasia (Strong), mode of inheritance: AR
  • neurodevelopmental disorder (Strong), mode of inheritance: AR

Clinical Genomic Database

Source: CGD

ConditionInheritanceIntervention CategoriesIntervention/Rationale Manifestation CategoriesReferences
Neurodevelopmental disorder with spasticity, cataracts, and cerebellar hypoplasiaARGeneralGenetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testingCraniofacial; Neurologic; Ophthalmologic33443317

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MED27 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MED27 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
3
clinvar
3
missense
18
clinvar
18
nonsense
4
clinvar
4
start loss
0
frameshift
2
clinvar
2
inframe indel
0
splice donor/acceptor (+/-2bp)
0
splice region
0
non coding
1
clinvar
1
Total 0 0 24 4 0

Variants in MED27

This is a list of pathogenic ClinVar variants found in the MED27 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
9-131860568-G-C Likely benign (Sep 01, 2024)3389763
9-131860576-G-A not specified Uncertain significance (May 09, 2024)3336059
9-131860596-G-A Intellectual disability Uncertain significance (-)816814
9-131860603-C-T Neurodevelopmental disorder with spasticity, cataracts, and cerebellar hypoplasia Uncertain significance (Jun 17, 2023)1064750
9-131860608-T-C Inborn genetic diseases Uncertain significance (Sep 27, 2022)2313555
9-131860624-A-G Inborn genetic diseases Uncertain significance (Dec 09, 2023)3125057
9-131860635-G-A Neurodevelopmental disorder with spasticity, cataracts, and cerebellar hypoplasia Uncertain significance (Apr 28, 2021)1064749
9-131860655-G-GT Inborn genetic diseases Uncertain significance (Sep 13, 2021)2405004
9-131863088-G-A Neurodevelopmental disorder with spasticity, cataracts, and cerebellar hypoplasia Pathogenic (Apr 23, 2021)1064746
9-131884070-T-A Inborn genetic diseases Uncertain significance (Dec 07, 2021)2266194
9-131884101-T-C Neurodevelopmental disorder with spasticity, cataracts, and cerebellar hypoplasia Pathogenic (Apr 23, 2021)1064751
9-131887958-A-G Likely benign (Apr 01, 2023)2659637
9-131893988-G-C Inborn genetic diseases Uncertain significance (Dec 21, 2022)2338747
9-131939387-C-G See cases Uncertain significance (Nov 25, 2022)2430333
9-131939387-CAT-C Neurodevelopmental disorder with spasticity, cataracts, and cerebellar hypoplasia Uncertain significance (Apr 28, 2021)1064752
9-131939427-A-T Uncertain significance (Jun 17, 2022)1804300
9-131939431-C-T Uncertain significance (Jun 17, 2022)1804299
9-131939471-A-T Uncertain significance (May 02, 2024)3375996
9-132014365-G-A Uncertain significance (May 12, 2024)3378321
9-132014368-C-T Inborn genetic diseases Uncertain significance (Jul 08, 2021)2231673
9-132014374-G-T Inborn genetic diseases Uncertain significance (Oct 20, 2023)3125056
9-132014396-C-T Inborn genetic diseases Uncertain significance (Jul 14, 2024)3394681
9-132014407-C-A Inborn genetic diseases Uncertain significance (May 28, 2024)3294068
9-132014422-ACT-A Neurodevelopmental disorder with spasticity, cataracts, and cerebellar hypoplasia Pathogenic (Apr 23, 2021)1064748
9-132077471-G-C Inborn genetic diseases Uncertain significance (Nov 15, 2021)2261627

GnomAD

Source: gnomAD

GeneTypeBio TypeTranscript Coding Exons Length
MED27protein_codingprotein_codingENST00000292035 8219802
pLI Probability
LOF Intolerant
pRec Probability
LOF Recessive
Individuals with
no LOFs
Individuals with
Homozygous LOFs
Individuals with
Heterozygous LOFs
Defined p
0.00001770.8901257160321257480.000127
Z-Score Observed Expected Observed/Expected Mutation Rate Total Possible in Transcript
Missense1.261311790.7340.000009712029
Missense in Polyphen2144.5040.47187466
Synonymous0.03007070.30.9950.00000381599
Loss of Function1.521016.70.5998.60e-7190

LoF frequencies by population

EthnicitySum of pLOFs p
African & African-American0.0001160.000116
Ashkenazi Jewish0.00009920.0000992
East Asian0.0001720.000163
Finnish0.000.00
European (Non-Finnish)0.0001770.000176
Middle Eastern0.0001720.000163
South Asian0.00009800.0000980
Other0.0001630.000163

dbNSFP

Source: dbNSFP

Function
FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. {ECO:0000269|PubMed:10882111, ECO:0000269|PubMed:9989412}.;
Pathway
Thyroid hormone signaling pathway - Homo sapiens (human);Developmental Biology;Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription;Transcriptional regulation of white adipocyte differentiation (Consensus)

Recessive Scores

pRec
0.109

Intolerance Scores

loftool
0.371
rvis_EVS
-0.47
rvis_percentile_EVS
23.04

Haploinsufficiency Scores

pHI
0.175
hipred
Y
hipred_score
0.661
ghis
0.616

Essentials

essential_gene_CRISPR
E
essential_gene_CRISPR2
E
essential_gene_gene_trap
E
gene_indispensability_pred
E
gene_indispensability_score
0.731

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium

Mouse Genome Informatics

Gene name
Med27
Phenotype

Gene ontology

Biological process
regulation of transcription by RNA polymerase II;transcription initiation from RNA polymerase II promoter;protein ubiquitination;stem cell population maintenance;positive regulation of nucleic acid-templated transcription
Cellular component
ubiquitin ligase complex;nucleus;nucleoplasm;transcription factor complex;nucleolus;cytosol;mediator complex
Molecular function
transcription coactivator activity;protein binding;ubiquitin protein ligase activity