MEX3A

mex-3 RNA binding family member A, the group of Ring finger proteins

Basic information

Region (hg38): 1:156072013-156082465

Previous symbols: [ "RKHD4" ]

Links

ENSG00000254726 ∙ NCBI:92312 ∙ OMIM:611007 ∙ HGNC:33482 ∙ Uniprot:A1L020 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MEX3A gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MEX3A gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			32			32
nonsense						0
start loss			1			1
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	33	0	0

Variants in MEX3A

This is a list of pathogenic ClinVar variants found in the MEX3A region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-156076635-G-C		not specified	Uncertain significance (Jan 17, 2023)
1-156076704-G-T		not specified	Uncertain significance (Nov 26, 2024)
1-156076713-C-T		not specified	Uncertain significance (Oct 26, 2022)
1-156076758-A-T		not specified	Uncertain significance (Aug 10, 2021)
1-156076762-C-G		not specified	Uncertain significance (Dec 31, 2023)
1-156076767-C-G		not specified	Uncertain significance (Sep 08, 2024)
1-156076873-G-T		not specified	Uncertain significance (Mar 20, 2023)
1-156076912-A-C		not specified	Uncertain significance (Jun 17, 2024)
1-156076953-T-A		not specified	Uncertain significance (Dec 28, 2022)
1-156077027-A-C		not specified	Uncertain significance (Aug 07, 2024)
1-156077110-C-T		not specified	Uncertain significance (Nov 12, 2021)
1-156077118-C-T		not specified	Uncertain significance (May 06, 2024)
1-156077157-C-A		not specified	Uncertain significance (Jan 24, 2024)
1-156077158-C-T		not specified	Uncertain significance (Jul 17, 2023)
1-156077167-G-A		not specified	Uncertain significance (Mar 01, 2023)
1-156077199-A-T		not specified	Uncertain significance (Nov 07, 2023)
1-156077205-G-A		not specified	Uncertain significance (Aug 21, 2024)
1-156077214-C-T		not specified	Uncertain significance (Jan 26, 2022)
1-156077301-C-T		not specified	Uncertain significance (Oct 30, 2023)
1-156077491-C-T		not specified	Uncertain significance (Jun 06, 2023)
1-156081601-G-A		not specified	Uncertain significance (Mar 01, 2024)
1-156081617-C-T		not specified	Uncertain significance (Oct 12, 2022)
1-156081674-C-T		not specified	Uncertain significance (Oct 16, 2024)
1-156081757-G-T		not specified	Uncertain significance (Apr 07, 2023)
1-156081769-G-C		not specified	Uncertain significance (Jun 24, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MEX3A	protein_coding	protein_coding	ENST00000532414	2	9986

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.980	0.0202	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.79	169	306	0.552	0.0000206	3279
Missense in Polyphen		56	140.24	0.39932		1206
Synonymous	1.70	111	136	0.815	0.0000100	1175
Loss of Function	3.20	0	11.9	0.00	5.98e-7	141

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: RNA binding protein, may be involved in post- transcriptional regulatory mechanisms.

Intolerance Scores

• rvis_EVS: -0.36
• rvis_percentile_EVS: 28.63

Haploinsufficiency Scores

• hipred: Y
• hipred_score: 0.731
• ghis: 0.547

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Mex3a

Gene ontology

• Cellular component: P-body;nucleus;cytosol
• Molecular function: RNA binding;metal ion binding