MFN2
protein-codingmitofusin 2
Gene summary
This gene encodes a mitochondrial membrane protein that participates in mitochondrial fusion and contributes to the maintenance and operation of the mitochondrial network. This protein is involved in the regulation of vascular smooth muscle cell proliferation, and it may play a role in the pathophysiology of obesity. Mutations in this gene cause Charcot-Marie-Tooth disease type 2A2, and hereditary motor and sensory neuropathy VI, which are both disorders of the peripheral nervous system. Defects in this gene have also been associated with early-onset stroke. Two transcript variants encoding the same protein have been identified. [provided by RefSeq, Jul 2008]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~35.0 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AD
Disease ID:MONDO:0007908
Submitter: Orphanet
Inheritance Pattern: AD
Disease ID:MONDO:0012231
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AR
Disease ID:MONDO:1060153
Submitter: PanelApp Australia
Inheritance Pattern: AD
Disease ID:MONDO:0019551
Submitter: Orphanet
Inheritance Pattern: SD
Disease ID:MONDO:0015358
Submitter: PanelApp Australia
Inheritance Pattern: AR
Disease ID:MONDO:0014906
Submitter: G2P
Inheritance Pattern: AR
Disease ID:MONDO:0019549
Submitter: Orphanet
Inheritance Pattern: AD
Disease ID:MONDO:0011002
Submitter: G2P
Inheritance Pattern: AR
Disease ID:MONDO:1060153
Submitter: ClinGen
*MFN2* was first reported in relation to autosomal recessive multiple symmetric lipomatosis with partial lipodystrophy (OMIM: 151800) in 2008 (Nicholson et al., PMID 18458227) in a single individual who was homozygous for the p.Arg707Trp variant. We have curated the inheritance pattern for *MFN2*-related lipodystrophy as a recessive mode of inheritance as this has been consistently reported since 2008 (Carr et al., PMID 26114802; Sawyer et al., PMID 26085578; Capel et al., PMID: 30158064; Rocha et al., PMID: 28414270). One specific *MFN2* variant, p.Arg707Trp, has been reported in all multiple symmetric lipomatosis with partial lipodystrophy cases to date. The majority of individuals are homozygous for this variant, although the p.Arg707Trp has also been reported in trans with a second *MFN2* variant in several cases, including a multi-exon deletion, an in-frame deletion, and a splice site variant (Carr et al., PMID 26114802; Rocha et al., PMID: 28414270; Braszak-Cymerman et al., PMID: 37162328). Individuals typically present with upper body adipose overgrowth and lipodystrophy in the arms and legs, and most individuals also develop progressive distal weakness and axonal neuropathy. Of note, the severity of lipomatosis is variable (Capel et al., PMID: 30158064). Individuals also develop, hypertriglyceridemia, and hepatic steatosis over time (Sawyer et al., PMID 26085578; Capel et al., PMID: 30158064; Rocha et al., PMID: 28414270) with glucose intolerance progressing over time. Another feature is very low circulating leptin levels and low adiponectin levels (Capel et al., PMID: 30158064; Rocha et al., PMID: 28414270). Less common features include hearing loss, and precocious puberty (Capel et al., PMID: 30158064, Nicholson et al., PMID 18458227). At least four multiple symmetric lipomatosis with partial lipodystrophy-causing *MFN2* variants have been reported; however, all affected individuals have at least one copy of the p.Arg707Trp allele. Evidence supporting the association of this gene with lipodystrophy includes case-level data, and experimental data. The aggregated score for case-level data is 12 points. Variants in this gene were curated for this summary in 15 probands in 6 publications (PMIDs: 18458227, 26114802, 26085578, 37162328, 28414270, 30158064). More evidence is available to support the gene-disease association in the literature, but as the maximum score for genetic evidence (12 points) has been reached; this has not been curated exhaustively. This gene-disease relationship is supported by functional assays, knock-in mouse models, expression studies, and protein interactions (PMIDs: 26085578, 36722855, 28414270). Total points for experimental evidence are 3.5. Total points for genetic and experimental evidence together are 15.5. Per criteria outlined by the ClinGen Lumping and Splitting Working Group, we found differences in inheritance pattern, mutational mechanism, and phenotype for variants causing lipomatosis and lipodystrophy vs. those causing neuromuscular conditions. Therefore, we curated *MFN2* for autosomal recessive multiple symmetric lipomatosis with partial lipodystrophy (OMIM: 151800) and semidominant axonal hereditary motor and sensory neuropathy will be curated separately in split curations. Of note, heterozygous family members of individuals with *MFN2*-related autosomal recessive multiple symmetric lipomatosis with partial lipodystrophy with mild Charcot Marie Tooth phenotypes have been reported, although unaffected heterozygous carriers have also been described though the extent of detailed phenotyping in those cases is unclear (Capel et al., PMID: 30158064; Sawyer et al., PMID 26085578; Braathen et al., PMID: 20350294). In summary, *MFN2* is definitively associated with autosomal recessive multiple symmetric lipomatosis with partial lipodystrophy. This has been repeatedly demonstrated in both the research and clinical diagnostic settings and has been upheld over time. This classification was approved by the ClinGen Monogenic Diabetes GCEP on September 10, 2025 (SOP Version 11).
Inheritance Pattern: AD
Disease ID:MONDO:0012231
Submitter: Orphanet
Inheritance Pattern: AR
Disease ID:MONDO:0014906
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: SD
Disease ID:MONDO:0012231
Submitter: ClinGen
MFN2 encodes for GTPases on the outer mitochondrial membranes. The gene was first described as the cause of CMT2 in 14 families in 2004 (PMID: 15064763). A subsequent study screened 323 CMT2 patients and identified significant variants in 29 of them; up to 33% of patients with family history of CMT carried a likely pathogenic MFN2 variant (PMID: 16714318). Chung et al reported 10 pathogenic mutations in 26 patients from 15 families (PMID: 16835246). MFN2 is expressed in the liver and adipose tissues, and is abundantly expressed in the brain. MFN2 is essential for mitochondrial fusion and contact, mitochondrial transport, ER-mitochondrial contact, and is a mediator of cellular autophagy and mitophagy. Two studies have reported semidominant families with axonal motor and sensory neuropathy with pathogenic variants in MFN2 identified through candidate gene sequencing. Phenotype was variable in many studies, even with the same mutation, as some families had optic atrophy, but others did not. Optic atrophy as an additional symptom to CMT2 was first reported in 6 families by Zuchner et al, where three probands carried de novo MFN2 changes (PMID: 16437557). Other phenotypes reported included periventricular and subcortical hyperintense lesions by brain MRI in eight patients, sensorineural hearing loss in three patients, and bilateral extensor plantar responses in two patients. The role of MFN2 with mitochondrial function, shape, mobility and fusion has been supported with experimental functional studies (Baloh et al, 2007, PMID: 17215403; Chen et al, 2003, PMID: 12527753). In summary, MFN2 is DEFINITIVELY associated with semidominant axonal hereditary motor and sensory neuropathy due to the presence of both genetic case level evidence and experimental evidence.
Clinical Genomic Database (CGD)
Manifestation: Dermatologic; Neurologic; Ophthalmologic
Intervention: Dermatologic
Rationale: The severity of manifestations in Lipomatosis, multiple symmetric, with or without peripheral neuropathy has been suggested as being influenced by alcohol consumption
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to MFN2 variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_014874.4. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 10 | 207 | 7 | 224 | ||
| missense | 43 | 134 | 576 | 15 | 1 | 769 |
| nonsense | 20 | 6 | 2 | 28 | ||
| start loss | 1 | 1 | ||||
| frameshift | 25 | 7 | 6 | 38 | ||
| splice donor/acceptor (+/-2bp) | 7 | 8 | 7 | 22 | ||
| Total | 95 | 155 | 602 | 222 | 8 | 1082 |
Highest pathogenic variant AF is 0.0004528632
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_055689.1 | 17 | MANE Select | |
| Ensembl | ENSP00000235329.5 | 17 | MANE Select | |
| RefSeq | NP_001121132.1 | 17 | Standard | |
| Ensembl | ENSP00000412023.1 | 2 | Standard |
Model Organisms & Knockout Phenotypes
Observed phenotypic effects in mouse and zebrafish models
| Gene / Model | Organism | Observed Phenotype |
|---|---|---|
| mfn2 | Danio rerio | Structure: thrombocyte Quality: decreased amount abnormal |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Mitophagy - animal - Homo sapiens (human)
- NOD-like receptor signaling pathway - Homo sapiens (human)
- Factors involved in megakaryocyte development and platelet production
- Pink/Parkin Mediated Mitophagy
- Mitophagy
Biological Process
- blastocyst formation
- protein targeting to mitochondrion
- apoptotic process
- response to unfolded protein
- mitochondrial membrane organization
Molecular Function
- GTPase activity
- protein binding
- GTP binding
- ubiquitin protein ligase binding
Cellular Component
- mitochondrion
- mitochondrial outer membrane
- cytosol
- microtubule cytoskeleton
- integral component of membrane
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000235329
- Coding exons
- 17
- Length
- 33334
- Individuals with no LoFs
- 125729
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 19
- Defined
- 125748
- p
- 0.0000756
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 1.66 | 326 | 422 | 0.773 | 0.0000274 | 5025 |
| Missense (PolyPhen) | 117 | 170.71 | 0.68538 | 2146 | ||
| Synonymous | -0.534 | 172 | 163 | 1.05 | 0.0000103 | 1456 |
| Loss of Function | 4.90 | 5 | 37.3 | 0.134 | 0.00000206 | 421 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.00018 | 0.00012 | rare |
| Latino/Admixed American | 0.000029 | 0.000029 | rare |
| Ashkenazi Jewish | 0.000099 | 0.000099 | rare |
| East Asian | 0.00011 | 0.00011 | rare |
| Finnish | 0.000047 | 0.000046 | rare |
| European (Non-Finnish) | 0.000080 | 0.000079 | rare |
| South Asian | 0.000065 | 0.000065 | rare |
| Other | 0.00016 | 0.00016 | rare |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Mitochondrial outer membrane GTPase that mediates mitochondrial clustering and fusion (PubMed:11181170, PubMed:11950885, PubMed:28114303). Mitochondria are highly dynamic organelles, and their morphology is determined by the equilibrium between mitochondrial fusion and fission events (PubMed:28114303). Overexpression induces the formation of mitochondrial networks (PubMed:28114303). Membrane clustering requires GTPase activity and may involve a major rearrangement of the coiled coil domains (Probable). Plays a central role in mitochondrial metabolism and may be associated with obesity and/or apoptosis processes (By similarity). Plays an important role in the regulation of vascular smooth muscle cell proliferation (By similarity). Involved in the clearance of damaged mitochondria via selective autophagy (mitophagy) (PubMed:23620051). Is required for PRKN recruitment to dysfunctional mitochondria (PubMed:23620051). Involved in the control of unfolded protein response (UPR) upon ER stress including activation of apoptosis and autophagy during ER stress (By similarity). Acts as an upstream regulator of EIF2AK3 and suppresses EIF2AK3 activation under basal conditions (By similarity). {ECO:0000250|UniProtKB:Q80U63, ECO:0000250|UniProtKB:Q8R500, ECO:0000269|PubMed:11181170, ECO:0000269|PubMed:11950885, ECO:0000269|PubMed:23620051, ECO:0000269|PubMed:26085578, ECO:0000269|PubMed:28114303, ECO:0000305}.;
- Disease
- DISEASE: Charcot-Marie-Tooth disease 2A2B (CMT2A2B) [MIM:617087]: An axonal form of Charcot-Marie-Tooth disease, a disorder of the peripheral nervous system, characterized by progressive weakness and atrophy, initially of the peroneal muscles and later of the distal muscles of the arms. Charcot-Marie-Tooth disease is classified in two main groups on the basis of electrophysiologic properties and histopathology: primary peripheral demyelinating neuropathies (designated CMT1 when they are dominantly inherited) and primary peripheral axonal neuropathies (CMT2). Neuropathies of the CMT2 group are characterized by signs of axonal degeneration in the absence of obvious myelin alterations, normal or slightly reduced nerve conduction velocities, and progressive distal muscle weakness and atrophy. CMT2A2B is a severe form with autosomal recessive inheritance. {ECO:0000269|PubMed:18458227, ECO:0000269|PubMed:20350294, ECO:0000269|PubMed:21715711, ECO:0000269|PubMed:26085578, ECO:0000269|PubMed:26955893}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Charcot-Marie-Tooth disease 2A2A (CMT2A2A) [MIM:609260]: An axonal form of Charcot-Marie-Tooth disease, a disorder of the peripheral nervous system, characterized by progressive weakness and atrophy, initially of the peroneal muscles and later of the distal muscles of the arms. Charcot-Marie-Tooth disease is classified in two main groups on the basis of electrophysiologic properties and histopathology: primary peripheral demyelinating neuropathies (designated CMT1 when they are dominantly inherited) and primary peripheral axonal neuropathies (CMT2). Neuropathies of the CMT2 group are characterized by signs of axonal degeneration in the absence of obvious myelin alterations, normal or slightly reduced nerve conduction velocities, and progressive distal muscle weakness and atrophy. {ECO:0000269|PubMed:15064763, ECO:0000269|PubMed:15549395, ECO:0000269|PubMed:16762064, ECO:0000269|PubMed:20350294, ECO:0000269|PubMed:22206013}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Neuropathy, hereditary motor and sensory, 6A (HMSN6A) [MIM:601152]: An autosomal dominant neurologic disorder characterized by optic atrophy and peripheral sensorimotor neuropathy manifesting as axonal Charcot-Marie-Tooth disease. Charcot-Marie-Tooth disease is a disorder of the peripheral nervous system, characterized by progressive weakness and atrophy, initially of the peroneal muscles and later of the distal muscles of the arms. It is classified in two main groups on the basis of electrophysiologic properties and histopathology: primary peripheral demyelinating neuropathies and primary peripheral axonal neuropathies. Peripheral axonal neuropathies are characterized by signs of axonal regeneration in the absence of obvious myelin alterations, and normal or slightly reduced nerve conduction velocities. {ECO:0000269|PubMed:16437557, ECO:0000269|PubMed:20350294, ECO:0000269|PubMed:24604904, ECO:0000269|PubMed:26085578}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Recessive Scores
- pRec
- 0.0922
Intolerance Scores
- LoFtool
- 0.0178
- RVIS EVS
- -0.77
- RVIS percentile EVS
- 13.1
Essentials
- Essential (CRISPR)
- E
- Essential (CRISPR2)
- E
- Essential (gene trap)
- E
- Indispensability pred.
- E
- Indispensability score
- 0.992
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |