MICOS10

mitochondrial contact site and cristae organizing system subunit 10, the group of Mitochondrial contact site and cristae organizing system subunits

Basic information

Region (hg38): 1:19484403-19629821

Previous symbols: [ "C1orf151", "MINOS1" ]

Links

ENSG00000173436 ∙ NCBI:440574 ∙ OMIM:616574 ∙ HGNC:32068 ∙ Uniprot:Q5TGZ0 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MICOS10 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MICOS10 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			7			7
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			1			1
Total	0	0	8	0	0

Variants in MICOS10

This is a list of pathogenic ClinVar variants found in the MICOS10 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-19597052-G-A		not specified	Uncertain significance (Jun 26, 2023)
1-19597059-A-C		not specified	Uncertain significance (Feb 28, 2024)
1-19597089-C-T		not specified	Uncertain significance (May 04, 2022)
1-19597092-A-G		not specified	Uncertain significance (Apr 25, 2022)
1-19597107-T-C		not specified	Uncertain significance (Nov 16, 2021)
1-19600964-C-A		not specified	Uncertain significance (Jun 10, 2024)
1-19622103-C-G		not specified	Uncertain significance (Dec 28, 2022)
1-19623581-A-C		not specified	Uncertain significance (Jul 14, 2023)
1-19625551-C-A		not specified	Uncertain significance (Oct 04, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MICOS10	protein_coding	protein_coding	ENST00000322753	4	32838

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.787	0.207	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.0383	42	41.3	1.02	0.00000187	494
Missense in Polyphen		5	10.012	0.49941		136
Synonymous	-0.212	17	15.9	1.07	7.69e-7	139
Loss of Function	2.10	0	5.12	0.00	2.15e-7	66

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane. {ECO:0000269|PubMed:22114354}.

Recessive Scores

• pRec: 0.0999

Intolerance Scores

• rvis_EVS: 0.01
• rvis_percentile_EVS: 54.63

Haploinsufficiency Scores

• pHI: 0.461
• hipred: N
• hipred_score: 0.294
• ghis: 0.548

Essentials

• essential_gene_CRISPR: E
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: E
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Low	Low	Low
Primary Immunodeficiency	Low	Low	Low
Cancer	Low	Low	Low

Mouse Genome Informatics

• Gene name: Minos1

Gene ontology

• Biological process: biological_process
• Cellular component: mitochondrion;MICOS complex
• Molecular function: molecular_function;protein binding