MICOS10-NBL1

MICOS10-NBL1 readthrough

Basic information

Region (hg38): 1:19597067-19656927

Previous symbols: [ "MINOS1-NBL1" ]

Links

ENSG00000270136 ∙ NCBI:100532736 ∙ ∙ HGNC:48338 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MICOS10-NBL1 gene.

• Inborn genetic diseases (2 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MICOS10-NBL1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)			1			1
splice region						0
non coding			1			1
Total	0	0	2	0	0

Variants in MICOS10-NBL1

This is a list of pathogenic ClinVar variants found in the MICOS10-NBL1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-19597089-C-T		not specified	Uncertain significance (May 04, 2022)
1-19597092-A-G		not specified	Uncertain significance (Apr 25, 2022)
1-19597107-T-C		not specified	Uncertain significance (Nov 16, 2021)
1-19600964-C-A		not specified	Uncertain significance (Jun 10, 2024)
1-19622103-C-G		not specified	Uncertain significance (Dec 28, 2022)
1-19623581-A-C		not specified	Uncertain significance (Jul 14, 2023)
1-19625551-C-A		not specified	Uncertain significance (Oct 04, 2022)
1-19643366-C-T		not specified	Uncertain significance (Sep 17, 2021)
1-19655338-A-G		not specified	Uncertain significance (Feb 14, 2023)
1-19656882-C-T		not specified	Uncertain significance (Jul 19, 2022)
1-19656900-C-A		not specified	Uncertain significance (Jun 12, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MICOS10-NBL1	protein_coding	protein_coding	ENST00000602662	3	61077

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0287	0.814	125701	0	8	125709	0.0000318

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.53	61	105	0.580	0.00000584	1173
Missense in Polyphen		17	44.798	0.37948		503
Synonymous	0.756	40	46.6	0.859	0.00000319	354
Loss of Function	1.09	3	5.83	0.515	2.48e-7	66

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000886	0.0000886
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000368	0.0000352
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.000167	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Possible candidate as a tumor suppressor gene of neuroblastoma. May play an important role in preventing cells from entering the final stage (G1/S) of the transformation process.
• Pathway: TGF-beta signaling pathway - Homo sapiens (human) (Consensus)

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.180

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Cellular component: mitochondrion;MICOS complex