MIR3142HG

MIR3142 host gene, the group of MicroRNA non-coding host genes

Basic information

Region (hg38): 5:160438594-160600965

Links

ENSG00000253522 ∙ ∙ ∙ HGNC:51944 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MIR3142HG gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MIR3142HG gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in MIR3142HG

This is a list of pathogenic ClinVar variants found in the MIR3142HG region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
5-160565482-G-A		not specified	Uncertain significance (Jan 23, 2024)
5-160565493-C-T		not specified	Uncertain significance (May 23, 2023)
5-160565518-T-C		not specified	Uncertain significance (Dec 14, 2022)
5-160565521-G-C		not specified	Uncertain significance (Dec 28, 2022)
5-160565589-G-A		not specified	Uncertain significance (Jan 09, 2023)
5-160565595-C-A		not specified	Uncertain significance (Aug 13, 2021)
5-160565610-T-A		not specified	Uncertain significance (Jun 05, 2024)
5-160565617-T-A		not specified	Uncertain significance (Nov 09, 2021)
5-160565630-A-C		not specified	Uncertain significance (May 10, 2024)
5-160565836-C-A		not specified	Uncertain significance (Nov 09, 2022)
5-160565860-G-C		not specified	Uncertain significance (Aug 01, 2022)
5-160565864-C-A		not specified	Uncertain significance (Apr 11, 2023)
5-160565868-C-T		not specified	Uncertain significance (Jun 16, 2022)
5-160565879-T-A		not specified	Uncertain significance (Jun 21, 2022)
5-160569533-C-T		not specified	Uncertain significance (Aug 29, 2022)
5-160569559-T-C		not specified	Uncertain significance (Dec 18, 2023)
5-160569580-G-A		not specified	Uncertain significance (May 13, 2024)
5-160569591-G-T		not specified	Uncertain significance (Jan 23, 2024)
5-160569643-A-G		not specified	Uncertain significance (Mar 07, 2024)
5-160569656-C-T		not specified	Uncertain significance (Jan 10, 2022)
5-160589597-T-C		not specified	Uncertain significance (Jun 14, 2023)
5-160589677-A-G			Benign (Jan 01, 2024)
5-160591127-A-G		not specified	Uncertain significance (May 09, 2023)
5-160591142-G-A			Uncertain significance (Mar 01, 2019)
5-160598829-T-A		not specified	Uncertain significance (Jul 25, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP