MIR3659HG

MIR3659 host gene, the group of MicroRNA non-coding host genes

Basic information

Region (hg38): 1:38031125-38119530

Links

ENSG00000224592 ∙ NCBI:105378653 ∙ ∙ HGNC:54306 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MIR3659HG gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MIR3659HG gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in MIR3659HG

This is a list of pathogenic ClinVar variants found in the MIR3659HG region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-38045395-A-T		not specified	Uncertain significance (May 27, 2022)
1-38045480-C-T		not specified	Uncertain significance (Mar 22, 2023)
1-38045633-C-A		not specified	Uncertain significance (Nov 09, 2024)
1-38046015-C-G		not specified	Uncertain significance (Apr 07, 2023)
1-38046044-C-T		not specified	Uncertain significance (Jul 29, 2022)
1-38046065-C-A		not specified	Uncertain significance (Jun 07, 2024)
1-38046087-G-T		not specified	Uncertain significance (Jun 06, 2023)
1-38046107-G-C		not specified	Uncertain significance (Jun 05, 2024)
1-38046137-A-C		not specified	Uncertain significance (Nov 16, 2021)
1-38046143-C-T		not specified	Uncertain significance (Dec 20, 2021)
1-38046227-C-T		not specified	Uncertain significance (Jan 17, 2024)
1-38046260-C-T		not specified	Uncertain significance (Nov 06, 2023)
1-38046266-C-G		not specified	Uncertain significance (May 09, 2024)
1-38046350-T-C		not specified	Likely benign (Apr 07, 2023)
1-38046414-T-G			Likely benign (Jul 01, 2022)
1-38046428-C-T		not specified	Uncertain significance (Dec 19, 2023)
1-38046439-C-T		not specified	Uncertain significance (May 09, 2023)
1-38046452-C-G		not specified	Uncertain significance (Nov 09, 2023)
1-38046461-C-T		not specified	Uncertain significance (Aug 06, 2024)
1-38046467-C-G		not specified	Uncertain significance (Sep 02, 2024)
1-38046499-C-A		not specified	Uncertain significance (Aug 28, 2024)
1-38046677-T-A		not specified	Uncertain significance (Nov 09, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP