MKX

mohawk homeobox, the group of TALE class homeoboxes and pseudogenes

Basic information

Region (hg38): 10:27672874-27746060

Previous symbols: [ "C10orf48", "IRXL1" ]

Links

ENSG00000150051 ∙ NCBI:283078 ∙ OMIM:601332 ∙ HGNC:23729 ∙ Uniprot:Q8IYA7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MKX gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MKX gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			23		1	24
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	23	1	1

Variants in MKX

This is a list of pathogenic ClinVar variants found in the MKX region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
10-27675330-C-T		not specified	Uncertain significance (Apr 06, 2022)
10-27675551-G-A		not specified	Uncertain significance (Feb 28, 2023)
10-27734461-C-T		not specified	Uncertain significance (Nov 18, 2022)
10-27734503-A-C		not specified	Uncertain significance (Jan 24, 2024)
10-27734558-T-C		not specified	Uncertain significance (Jan 17, 2024)
10-27734569-A-G		not specified	Uncertain significance (May 05, 2023)
10-27734572-A-G		not specified	Uncertain significance (Mar 04, 2024)
10-27734584-G-C		not specified	Uncertain significance (Jan 23, 2023)
10-27734602-A-G		not specified	Uncertain significance (Jun 17, 2024)
10-27734625-C-A		MKX-related disorder	Uncertain significance (Mar 09, 2023)
10-27734672-C-T		not specified	Uncertain significance (Aug 02, 2021)
10-27734674-C-T		not specified	Uncertain significance (Feb 26, 2024)
10-27734675-G-A		not specified	Uncertain significance (Aug 22, 2023)
10-27734723-T-A		not specified	Uncertain significance (Feb 05, 2024)
10-27734724-C-A		MKX-related disorder	Likely benign (Dec 13, 2023)
10-27735223-T-G		not specified	Uncertain significance (Jun 24, 2022)
10-27741475-T-C		not specified	Uncertain significance (Apr 06, 2024)
10-27741500-G-C		not specified	Uncertain significance (Aug 09, 2021)
10-27743270-G-A		not specified	Uncertain significance (May 18, 2023)
10-27743271-G-A		not specified	Uncertain significance (Nov 17, 2023)
10-27743286-C-G		not specified	Uncertain significance (Dec 01, 2022)
10-27743297-C-T			Benign (Dec 31, 2019)
10-27743298-G-A		not specified	Uncertain significance (Jun 17, 2024)
10-27743300-G-T		not specified	Uncertain significance (Oct 31, 2022)
10-27743313-C-G		not specified	Uncertain significance (May 05, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MKX	protein_coding	protein_coding	ENST00000375790	6	73186

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.884	0.116	125739	0	9	125748	0.0000358

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.320	193	206	0.937	0.0000115	2277
Missense in Polyphen		70	88.39	0.79194		944
Synonymous	0.637	76	83.4	0.911	0.00000506	683
Loss of Function	3.22	2	15.8	0.127	7.76e-7	192

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000926	0.0000926
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000550	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.0000440	0.0000439
Middle Eastern	0.0000550	0.0000544
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May act as a morphogenetic regulator of cell adhesion. {ECO:0000250}.

Intolerance Scores

• loftool: 0.344
• rvis_EVS: 0.66
• rvis_percentile_EVS: 84.44

Haploinsufficiency Scores

• pHI: 0.247
• hipred: Y
• hipred_score: 0.749
• ghis: 0.398

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.640

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Mkx
• Phenotype: muscle phenotype; skeleton phenotype; limbs/digits/tail phenotype

Zebrafish Information Network

• Gene name: mkxa
• Affected structure: skeletal muscle cell
• Phenotype tag: abnormal
• Phenotype quality: irregular spatial pattern

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II;muscle organ development
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;sequence-specific DNA binding