MLN

motilin, the group of Neuropeptides

Basic information

Region (hg38): 6:33794673-33804003

Links

ENSG00000096395 ∙ NCBI:4295 ∙ OMIM:158270 ∙ HGNC:7141 ∙ Uniprot:P12872 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MLN gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MLN gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			4			4
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	4	0	0

Variants in MLN

This is a list of pathogenic ClinVar variants found in the MLN region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-33795580-A-C		not specified	Uncertain significance (Aug 07, 2024)
6-33795604-A-G		not specified	Uncertain significance (Oct 08, 2024)
6-33799115-T-C		not specified	Uncertain significance (Jan 23, 2024)
6-33799137-G-T		not specified	Uncertain significance (Jan 18, 2023)
6-33801085-C-T		not specified	Uncertain significance (Dec 04, 2024)
6-33801121-C-T		not specified	Uncertain significance (Jan 26, 2022)
6-33801138-G-A		not specified	Uncertain significance (Aug 12, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MLN	protein_coding	protein_coding	ENST00000430124	4	9339

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00411	0.672	125695	0	41	125736	0.000163

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.508	54	65.6	0.824	0.00000356	738
Missense in Polyphen		16	16.389	0.97624		235
Synonymous	0.671	21	25.3	0.830	0.00000151	218
Loss of Function	0.613	4	5.56	0.720	2.36e-7	64

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000116	0.000116
Ashkenazi Jewish	0.00	0.00
East Asian	0.00202	0.00201
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00202	0.00201
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Plays an important role in the regulation of interdigestive gastrointestinal motility and indirectly causes rhythmic contraction of duodenal and colonic smooth muscle.
• Pathway: Signaling by GPCR;Signal Transduction;GPCR signaling-G alpha q;GPCR signaling-cholera toxin;GPCR signaling-pertussis toxin;Peptide ligand-binding receptors;Class A/1 (Rhodopsin-like receptors);GPCR ligand binding;GPCR signaling-G alpha s Epac and ERK;GPCR signaling-G alpha s PKA and ERK;GPCR signaling-G alpha i;G alpha (q) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.0763

Intolerance Scores

• loftool: 0.739
• rvis_EVS: 0.37
• rvis_percentile_EVS: 74.95

Haploinsufficiency Scores

• pHI: 0.0168
• hipred: N
• hipred_score: 0.153

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.141

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: smooth muscle contraction;G protein-coupled receptor signaling pathway;regulation of signaling receptor activity
• Cellular component: extracellular region
• Molecular function: hormone activity;motilin receptor binding