MLNR

motilin receptor, the group of Peptide receptors

Basic information

Region (hg38): 13:49220338-49222377

Previous symbols: [ "GPR38" ]

Links

ENSG00000102539 ∙ NCBI:2862 ∙ OMIM:602885 ∙ HGNC:4495 ∙ Uniprot:O43193 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MLNR gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MLNR gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			37	1		38
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	37	2	0

Variants in MLNR

This is a list of pathogenic ClinVar variants found in the MLNR region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
13-49220341-G-T		not specified	Uncertain significance (Dec 16, 2021)
13-49220356-G-C		not specified	Uncertain significance (Aug 02, 2022)
13-49220360-G-T		not specified	Uncertain significance (Oct 04, 2024)
13-49220381-G-C		not specified	Uncertain significance (Mar 25, 2024)
13-49220386-C-T		not specified	Uncertain significance (Jun 06, 2023)
13-49220416-G-C		not specified	Uncertain significance (Apr 08, 2024)
13-49220429-C-T		not specified	Uncertain significance (Oct 25, 2023)
13-49220536-C-T		not specified	Uncertain significance (Mar 14, 2023)
13-49220593-C-T		not specified	Uncertain significance (Sep 12, 2023)
13-49220605-G-C		not specified	Uncertain significance (Dec 21, 2022)
13-49220641-C-T		not specified	Uncertain significance (Oct 22, 2021)
13-49220644-C-T		not specified	Uncertain significance (Jul 25, 2023)
13-49220671-C-G		not specified	Uncertain significance (Jul 12, 2023)
13-49220705-A-C		not specified	Uncertain significance (Jan 18, 2023)
13-49220743-C-A		not specified	Uncertain significance (Dec 27, 2023)
13-49220744-G-T		not specified	Uncertain significance (Apr 09, 2024)
13-49220761-C-T		not specified	Uncertain significance (Jan 22, 2024)
13-49220770-C-A		not specified	Uncertain significance (Dec 07, 2024)
13-49220899-G-A		not specified	Uncertain significance (Sep 25, 2023)
13-49220900-T-C		not specified	Uncertain significance (Sep 25, 2023)
13-49220941-C-T		not specified	Uncertain significance (Dec 07, 2021)
13-49220948-C-G		not specified	Uncertain significance (May 23, 2023)
13-49221004-G-C		not specified	Uncertain significance (Dec 06, 2022)
13-49221023-C-T		not specified	Uncertain significance (Jan 17, 2024)
13-49221032-G-C		not specified	Uncertain significance (Oct 26, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MLNR	protein_coding	protein_coding	ENST00000218721	2	2040

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0127	0.867	125484	0	22	125506	0.0000876

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.618	203	229	0.885	0.0000120	2526
Missense in Polyphen		79	80.388	0.98274		926
Synonymous	0.574	105	113	0.931	0.00000654	947
Loss of Function	1.28	4	7.89	0.507	3.48e-7	82

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000269	0.000269
Ashkenazi Jewish	0.000103	0.0000992
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000993	0.0000883
Middle Eastern	0.00	0.00
South Asian	0.0000340	0.0000327
Other	0.000346	0.000326

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Receptor for motilin. {ECO:0000269|PubMed:11322507}.
• Pathway: Neuroactive ligand-receptor interaction - Homo sapiens (human);GPCRs, Class A Rhodopsin-like;Signaling by GPCR;Signal Transduction;Peptide ligand-binding receptors;Class A/1 (Rhodopsin-like receptors);GPCR ligand binding;G alpha (q) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.113

Haploinsufficiency Scores

• pHI: 0.192
• hipred: N
• hipred_score: 0.465
• ghis: 0.433

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.441

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled peptide receptor activity;hormone binding