MMD

monocyte to macrophage differentiation associated, the group of Progestin and adipoQ receptor family

Basic information

Region (hg38): 17:55392621-55421924

Links

ENSG00000108960 ∙ NCBI:23531 ∙ OMIM:604467 ∙ HGNC:7153 ∙ Uniprot:Q15546 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MMD gene.

• not provided (2 variants)
• Inborn genetic diseases (2 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MMD gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1	1	2
missense			2			2
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	2	1	1

Variants in MMD

This is a list of pathogenic ClinVar variants found in the MMD region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
17-55394517-A-G			Likely benign (Feb 01, 2023)
17-55394523-A-G			Benign (Aug 21, 2018)
17-55411336-T-A		not specified	Uncertain significance (Dec 20, 2023)
17-55411404-G-A		not specified	Uncertain significance (Feb 28, 2024)
17-55414201-G-A		not specified	Uncertain significance (Jan 23, 2023)
17-55421684-C-A		not specified	Uncertain significance (Jan 10, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MMD	protein_coding	protein_coding	ENST00000262065	7	29380

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000134	0.864	125735	0	13	125748	0.0000517

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.69	78	133	0.588	0.00000722	1553
Missense in Polyphen		31	54.525	0.56855		664
Synonymous	0.235	42	44.0	0.955	0.00000248	436
Loss of Function	1.36	8	13.4	0.598	6.36e-7	161

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000289	0.0000289
Ashkenazi Jewish	0.00	0.00
East Asian	0.000165	0.000163
Finnish	0.00	0.00
European (Non-Finnish)	0.0000713	0.0000703
Middle Eastern	0.000165	0.000163
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Involved in the dynamics of lysosomal membranes associated with microglial activation following brain lesion. {ECO:0000250}.

Recessive Scores

• pRec: 0.426

Intolerance Scores

• loftool: 0.542
• rvis_EVS: -0.14
• rvis_percentile_EVS: 42.88

Haploinsufficiency Scores

• pHI: 0.434
• hipred: Y
• hipred_score: 0.543
• ghis: 0.598

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.124

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Low	Medium
Primary Immunodeficiency	Medium	Low	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Mmd

Zebrafish Information Network

• Gene name: mmd
• Affected structure: cardiac muscle cell
• Phenotype tag: abnormal
• Phenotype quality: decreased amount

Gene ontology

• Biological process: protein phosphorylation;cytolysis;regulation of protein localization;positive regulation of neuron differentiation;positive regulation of protein kinase activity
• Cellular component: lysosomal membrane;Golgi apparatus;integral component of plasma membrane;membrane;late endosome membrane
• Molecular function: protein kinase activity;signaling receptor activity