MORN1

MORN repeat containing 1

Basic information

Region (hg38): 1:2321253-2391707

Links

ENSG00000116151 ∙ NCBI:79906 ∙ ∙ HGNC:25852 ∙ Uniprot:Q5T089 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MORN1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MORN1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					2	2
missense			45	4		49
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	45	4	2

Variants in MORN1

This is a list of pathogenic ClinVar variants found in the MORN1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-2321387-C-T		not specified	Uncertain significance (Sep 13, 2023)
1-2321394-C-G		not specified	Uncertain significance (Jun 30, 2023)
1-2321408-G-T		not specified	Uncertain significance (Nov 18, 2023)
1-2321477-C-G		not specified	Uncertain significance (Nov 09, 2023)
1-2321477-C-T		not specified	Likely benign (Aug 17, 2022)
1-2321493-C-T		not specified	Uncertain significance (Jun 04, 2024)
1-2321498-C-T		not specified	Uncertain significance (Oct 06, 2021)
1-2321513-G-T		not specified	Uncertain significance (Feb 22, 2023)
1-2321529-G-A		not specified	Uncertain significance (Feb 15, 2023)
1-2321543-G-A		not specified	Uncertain significance (May 20, 2024)
1-2321558-C-T		not specified	Likely benign (Sep 15, 2021)
1-2321571-C-G		not specified	Uncertain significance (Jan 09, 2024)
1-2336505-G-T		not specified	Uncertain significance (Dec 13, 2021)
1-2336524-C-T		not specified	Uncertain significance (Jun 21, 2021)
1-2336539-C-T		not specified	Likely benign (Jan 04, 2024)
1-2336760-G-A		not specified	Uncertain significance (Feb 07, 2023)
1-2336764-G-A		not specified	Uncertain significance (Jun 03, 2022)
1-2336803-G-T		not specified	Uncertain significance (Nov 21, 2023)
1-2336818-A-G		not specified	Uncertain significance (Jun 01, 2023)
1-2336838-G-A		not specified	Uncertain significance (Aug 30, 2021)
1-2357468-G-A		not specified	Uncertain significance (Dec 19, 2022)
1-2357513-C-T		not specified	Uncertain significance (Jul 20, 2021)
1-2357542-G-A		not specified	Uncertain significance (May 09, 2024)
1-2357561-C-T		not specified	Uncertain significance (Nov 08, 2022)
1-2358595-G-A		not specified	Uncertain significance (Apr 23, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MORN1	protein_coding	protein_coding	ENST00000378531	14	70455

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.61e-11	0.357	125677	0	69	125746	0.000274

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.285	308	294	1.05	0.0000190	3143
Missense in Polyphen		94	90.045	1.0439		928
Synonymous	-0.0355	129	128	1.00	0.00000972	995
Loss of Function	1.10	20	26.0	0.768	0.00000124	300

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000423	0.000399
Ashkenazi Jewish	0.00	0.00
East Asian	0.000442	0.000435
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.000306	0.000290
Middle Eastern	0.000442	0.000435
South Asian	0.000519	0.000490
Other	0.000349	0.000326

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.0871

Intolerance Scores

• loftool: 0.788
• rvis_EVS: -0.08
• rvis_percentile_EVS: 47.15

Haploinsufficiency Scores

• pHI: 0.0701
• hipred: N
• hipred_score: 0.123
• ghis: 0.622

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.866

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Morn1