MPST

protein-coding

mercaptopyruvate sulfurtransferase

Gene summary

This protein encoded by this gene catalyzes the transfer of a sulfur ion from 3-mercaptopyruvate to cyanide or other thiol compounds. It may be involved in cysteine degradation and cyanide detoxification. There is confusion in literature between this protein (mercaptopyruvate sulfurtransferase, MPST), which appears to be cytoplasmic, and thiosulfate sulfurtransferase (rhodanese, TST, GeneID:7263), which is a mitochondrial protein. Deficiency in MPST activity has been implicated in a rare inheritable disorder known as mercaptolactate-cysteine disulfiduria (MCDU). Alternatively spliced transcript variants encoding same or different isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]

MANE transcript

NM_021126.8

Inheritance

AR

ClinVar variants

U:54B:2

Top phenotype

Encephalopathy due to beta-mercaptolactate-cysteine disulfiduria

gnomAD constraint

pLI —, LoF o/e 0.75

Max pathogenic AF

—

Genomic locus

chr22:37,019,635-37,029,821

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~10.2 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

encephalopathy due to beta-mercaptolactate-cysteine disulfiduriaNO_KNOWN

Inheritance Pattern: AR

Disease ID:MONDO:0009585

Submitter: ClinGen

The gene *MPST* encodes mercaptopyruvate sulfurtransferase, an enzyme that catalyzes the desulfuration of 3-mercaptopyruvate to generate enzyme bound persulfide and pyruvate. MPST also catalyzes the transfer of sulfur atoms from the persulfide to proteins and small thiol molecule acceptors. A deficiency in MPST enzymatic activity has been identified in relation to mercaptolactate-cysteine disulfiduria (MCDU), a rare autosomal recessive metabolic disorder originally associated with intellectual disability in 1968 by Crawhall et al. (PMID:5644041). Since then, several phenotypically normal individuals and individuals with intellectual disability have been identified with MCDU (PMIDs:4690911, 6945862). However, to date no individuals have been identified with biallelic variants in MPST resulting in MCDU or a deficiency in MPST enzymatic activity. One individual carrying a nonsense variant in the heterozygous state, which results in null enzymatic activity in yeast, displayed a normal MPST phenotype (PMID:16545926). Support for a potential gene-disease relationship comes from the biochemical function of MPST (PMID:33055309), which normally functions to convert cysteine-derived 3-mercaptopyruvate (3MP) to pyruvate, but when absent causes 3- mercaptopyruvate to be converted to 3-mercaptolactate (3ML). Individuals with urinary accumulations of 3ML were originally associated with MPST deficiency and MCDU. Additionally, a knock out MPST (-/-) mouse model demonstrated that KO mice were phenotypically normal besides elevated urinary mercaptolactate excretion and elevated passive systemic anaphylactic responses (PMID: 32012740). In summary, there is insufficient genetic evidence to support a gene-disease relationship. A classification of No Known Disease Relationship was approved by the General IEM GCEP on 04/28/2023.

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to MPST variants in ClinVar

3 Conditions Cataloged
not specifiedTotal: 53
Encephalopathy due to beta-mercaptolactate-cysteine disulfiduriaTotal: 1
MPST-related disorderTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_021126.8. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
1
missense
53
clinvar
2
clinvar
55
nonsense
0
start loss
0
frameshift
0
splice donor/acceptor (+/-2bp)
0
Total00542056
Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 49 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_021126.8RefSeqNP_066949.23MANE Select
ENST00000429360.6EnsemblENSP00000411719.33MANE Select
NM_001013436.4RefSeqNP_001013454.12Standard
NM_001130517.4RefSeqNP_001123989.12Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Sulfur relay system - Homo sapiens (human)
  • Cysteine and methionine metabolism - Homo sapiens (human)
  • Sulfur metabolism - Homo sapiens (human)
  • Beta-mercaptolactate-cysteine disulfiduria
  • Cysteine Metabolism

Biological Process

  • sulfur amino acid catabolic process
  • kidney development
  • liver development
  • cyanate catabolic process
  • response to toxic substance

Molecular Function

  • thiosulfate sulfurtransferase activity
  • 3-mercaptopyruvate sulfurtransferase activity
  • identical protein binding

Cellular Component

  • mitochondrial matrix
  • cytosol
  • cell junction
  • neuron projection
  • synapse

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000397129
Coding exons
3
Length
10188
Individuals with no LoFs
125688
Homozygous LoFs
0
Heterozygous LoFs
24
Defined
125712
p
0.0000955
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense1.211532010.7600.00001471983
Missense (PolyPhen)4056.560.70721610
Synonymous2.286997.60.7070.00000831654
Loss of Function0.769810.70.7466.99e-7106

Population LoF Frequency

PopulationCAFp-valueStatus
African00.0absent
Latino/Admixed American0.000150.00014rare
Ashkenazi Jewish0.0000990.000099rare
East Asian0.0000590.000054rare
Finnish00.0absent
European (Non-Finnish)0.000130.00012rare
South Asian0.0000650.000065rare
Other0.000170.00016rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Transfer of a sulfur ion to cyanide or to other thiol compounds. Also has weak rhodanese activity. Detoxifies cyanide and is required for thiosulfate biosynthesis. Acts as an antioxidant. In combination with cysteine aminotransferase (CAT), contributes to the catabolism of cysteine and is an important producer of hydrogen sulfide in the brain, retina and vascular endothelial cells. Hydrogen sulfide H(2)S is an important synaptic modulator, signaling molecule, smooth muscle contractor and neuroprotectant. Its production by the 3MST/CAT pathway is regulated by calcium ions. {ECO:0000250|UniProtKB:P97532}.;
Disease
DISEASE: Note=Aberrant MPST activity is found in a few cases of mercaptolactate-cysteine disulfiduria (MCDU) characterized by the appearance of large quantaties of the sulfur-containing amino acid, beta-mercaptolactate-cysteine disulfide, in the urine (PubMed:4973015, PubMed:4690911 and PubMed:6945862). Some cases have associated mental retardation (PubMed:4973015 and PubMed:6945862).;

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.749

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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