MRGPRF

MAS related GPR family member F, the group of G protein-coupled receptors, Class A orphans

Basic information

Region (hg38): 11:69004398-69013246

Previous symbols: [ "GPR168", "GPR140" ]

Links

ENSG00000172935 ∙ NCBI:116535 ∙ OMIM:607233 ∙ HGNC:24828 ∙ Uniprot:Q96AM1 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MRGPRF gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MRGPRF gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			25	1	1	27
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	25	1	2

Variants in MRGPRF

This is a list of pathogenic ClinVar variants found in the MRGPRF region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-69005294-G-C		not specified	Uncertain significance (Mar 01, 2023)
11-69005312-A-G		not specified	Uncertain significance (Aug 20, 2023)
11-69005332-G-C		not specified	Uncertain significance (Jun 17, 2022)
11-69005340-C-T		not specified	Uncertain significance (Dec 17, 2021)
11-69005411-T-C		not specified	Uncertain significance (Mar 20, 2023)
11-69005414-G-A			Uncertain significance (Aug 20, 2019)
11-69005438-T-C		not specified	Uncertain significance (May 26, 2022)
11-69005487-C-T		not specified	Uncertain significance (May 30, 2024)
11-69005504-G-C		MRGPRF-related condition	Uncertain significance (May 09, 2024)
11-69005526-A-G		not specified	Uncertain significance (Jul 15, 2021)
11-69005567-A-G		not specified	Uncertain significance (Dec 27, 2023)
11-69005574-A-G		not specified	Uncertain significance (May 24, 2024)
11-69005597-T-C		not specified	Uncertain significance (Mar 01, 2023)
11-69005652-G-A		not specified	Uncertain significance (Oct 02, 2023)
11-69005673-T-G		not specified	Uncertain significance (Apr 10, 2023)
11-69005735-G-T		not specified	Uncertain significance (Dec 09, 2023)
11-69005751-G-A		not specified	Uncertain significance (Aug 08, 2022)
11-69005757-G-C		not specified	Uncertain significance (Mar 25, 2022)
11-69005880-A-G		not specified	Uncertain significance (Oct 05, 2023)
11-69005922-C-T		not specified	Likely benign (Nov 09, 2021)
11-69005952-G-A		not specified	Uncertain significance (Feb 14, 2023)
11-69005993-C-A		not specified	Uncertain significance (Sep 16, 2021)
11-69006017-A-G		not specified	Uncertain significance (Dec 18, 2023)
11-69006045-C-T		not specified	Uncertain significance (Jul 25, 2023)
11-69006071-A-C		not specified	Uncertain significance (Apr 10, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MRGPRF	protein_coding	protein_coding	ENST00000309099	2	9015

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0241	0.921	125525	0	2	125527	0.00000797

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.647	187	214	0.875	0.0000146	2137
Missense in Polyphen		63	82.486	0.76377		862
Synonymous	0.334	102	106	0.959	0.00000815	723
Loss of Function	1.64	4	9.45	0.423	4.91e-7	91

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000310	0.0000310
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.0000655	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Orphan receptor. May bind to a neuropeptide and may regulate nociceptor function and/or development, including the sensation or modulation of pain (By similarity). {ECO:0000250}.

Intolerance Scores

• loftool: 0.345
• rvis_EVS: -0.2
• rvis_percentile_EVS: 38.82

Haploinsufficiency Scores

• pHI: 0.156
• hipred: N
• hipred_score: 0.282
• ghis: 0.579

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.196

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Mrgprf

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway
• Cellular component: plasma membrane;integral component of membrane;nuclear membrane
• Molecular function: G protein-coupled receptor activity