MRPS11

mitochondrial ribosomal protein S11, the group of Small subunit mitochondrial ribosomal proteins|Mitochondrial ribosomal proteins

Basic information

Region (hg38): 15:88467453-88480776

Links

ENSG00000181991 ∙ NCBI:64963 ∙ OMIM:611977 ∙ HGNC:14050 ∙ Uniprot:P82912 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MRPS11 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MRPS11 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			9	1		10
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	9	1	0

Variants in MRPS11

This is a list of pathogenic ClinVar variants found in the MRPS11 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-88467737-C-T		not specified	Likely benign (Apr 21, 2022)
15-88467761-G-T		not specified	Uncertain significance (Sep 29, 2023)
15-88467775-A-G		not specified	Uncertain significance (Jun 16, 2024)
15-88467975-G-A		not specified	Uncertain significance (May 15, 2024)
15-88472635-C-T		not specified	Uncertain significance (Aug 08, 2022)
15-88475181-G-A		not specified	Uncertain significance (Jun 01, 2023)
15-88475231-G-A		not specified	Uncertain significance (Jun 28, 2022)
15-88477876-C-T		not specified	Uncertain significance (Jan 19, 2024)
15-88477884-G-A		not specified	Uncertain significance (Aug 04, 2023)
15-88477917-A-G		not specified	Uncertain significance (Dec 18, 2023)
15-88477953-C-T		not specified	Uncertain significance (Mar 07, 2024)
15-88477954-G-A		not specified	Uncertain significance (Sep 16, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MRPS11	protein_coding	protein_coding	ENST00000325844	6	11539

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
4.69e-8	0.122	125734	0	14	125748	0.0000557

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.253	111	119	0.935	0.00000662	1237
Missense in Polyphen		43	51.752	0.83089		504
Synonymous	0.269	45	47.4	0.950	0.00000270	407
Loss of Function	-0.125	11	10.6	1.04	5.39e-7	106

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000239	0.000239
Ashkenazi Jewish	0.0000997	0.0000992
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000617	0.0000615
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Pathway: Ribosome - Homo sapiens (human);Mitochondrial translation initiation;Translation;Metabolism of proteins;Mitochondrial translation elongation;Mitochondrial translation termination;Mitochondrial translation (Consensus)

Recessive Scores

• pRec: 0.105

Intolerance Scores

• loftool: 0.855
• rvis_EVS: -0.09
• rvis_percentile_EVS: 46.74

Haploinsufficiency Scores

• pHI: 0.0893
• hipred: Y
• hipred_score: 0.624
• ghis: 0.551

Essentials

• essential_gene_CRISPR: E
• essential_gene_CRISPR2: E
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.936

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Mrps11

Gene ontology

• Biological process: ribosomal small subunit assembly;maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);translation;mitochondrial translation;DNA damage response, detection of DNA damage;mitochondrial translational elongation;mitochondrial translational termination
• Cellular component: mitochondrion;mitochondrial inner membrane;mitochondrial small ribosomal subunit
• Molecular function: RNA binding;structural constituent of ribosome;mRNA 5'-UTR binding;small ribosomal subunit rRNA binding