MRPS35

mitochondrial ribosomal protein S35, the group of Small subunit mitochondrial ribosomal proteins|Mitochondrial ribosomal proteins

Basic information

Region (hg38): 12:27710822-27756295

Links

ENSG00000061794 ∙ NCBI:60488 ∙ OMIM:611995 ∙ HGNC:16635 ∙ Uniprot:P82673 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MRPS35 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MRPS35 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1	1	2
missense			18	2	3	23
nonsense						0
start loss						0
frameshift			1			1
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	19	3	4

Variants in MRPS35

This is a list of pathogenic ClinVar variants found in the MRPS35 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-27710859-C-A			Benign (Jul 26, 2018)
12-27710863-C-T		not specified	Uncertain significance (Feb 28, 2023)
12-27710866-C-T		not specified	Uncertain significance (Dec 19, 2022)
12-27710872-T-A		not specified	Uncertain significance (Feb 28, 2024)
12-27710873-GTC-G			Uncertain significance (Nov 09, 2021)
12-27710902-G-A		not specified	Uncertain significance (Aug 21, 2023)
12-27710914-C-T		not specified	Uncertain significance (Aug 15, 2023)
12-27710926-C-T			Benign (Jul 02, 2018)
12-27714794-G-A			Benign (Jul 13, 2018)
12-27714798-A-G		not specified	Likely benign (Oct 26, 2022)
12-27716366-A-G		not specified	Uncertain significance (Mar 31, 2023)
12-27716451-T-G		not specified	Uncertain significance (Jun 21, 2021)
12-27719815-A-T		not specified	Uncertain significance (May 20, 2024)
12-27719833-C-G		not specified	Uncertain significance (Feb 22, 2023)
12-27724071-C-T		not specified	Uncertain significance (Mar 01, 2023)
12-27724079-A-G		not specified	Uncertain significance (Feb 22, 2023)
12-27724101-A-G		not specified	Uncertain significance (Jul 25, 2023)
12-27724154-C-T		not specified	Uncertain significance (Nov 02, 2023)
12-27724166-G-C		not specified	Uncertain significance (Jan 16, 2024)
12-27735475-A-C		not specified	Uncertain significance (Mar 23, 2022)
12-27735514-G-A		not specified	Uncertain significance (Sep 09, 2021)
12-27737564-G-A		not specified	Uncertain significance (Dec 13, 2022)
12-27737575-G-A		not specified	Likely benign (Jun 16, 2024)
12-27737581-A-T		not specified	Likely benign (Oct 06, 2023)
12-27737586-C-A		not specified	Uncertain significance (Jun 11, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MRPS35	protein_coding	protein_coding	ENST00000081029	8	45523

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
3.05e-9	0.305	125700	0	47	125747	0.000187

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.302	180	169	1.07	0.00000825	2077
Missense in Polyphen		57	57.319	0.99443		699
Synonymous	-0.0730	66	65.3	1.01	0.00000356	622
Loss of Function	0.742	15	18.4	0.813	0.00000103	218

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000417	0.000412
Ashkenazi Jewish	0.000398	0.000397
East Asian	0.000457	0.000435
Finnish	0.000139	0.000139
European (Non-Finnish)	0.000125	0.000123
Middle Eastern	0.000457	0.000435
South Asian	0.000242	0.000229
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Pathway: Mitochondrial translation initiation;Translation;Metabolism of proteins;Mitochondrial translation elongation;Mitochondrial translation termination;Mitochondrial translation (Consensus)

Recessive Scores

• pRec: 0.0804

Intolerance Scores

• loftool: 0.870
• rvis_EVS: -0.18
• rvis_percentile_EVS: 40.36

Haploinsufficiency Scores

• pHI: 0.0482
• hipred: N
• hipred_score: 0.417
• ghis: 0.553

Essentials

• essential_gene_CRISPR: E
• essential_gene_CRISPR2: E
• essential_gene_gene_trap: E
• gene_indispensability_pred: E
• gene_indispensability_score: 0.860

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Mrps35
• Phenotype: homeostasis/metabolism phenotype; skeleton phenotype

Gene ontology

• Biological process: DNA damage response, detection of DNA damage;mitochondrial translational elongation;mitochondrial translational termination
• Cellular component: mitochondrial inner membrane;mitochondrial small ribosomal subunit
• Molecular function: RNA binding;structural constituent of ribosome