MSMB

microseminoprotein beta

Basic information

Region (hg38): 10:46033307-46048180

Links

ENSG00000263639 ∙ NCBI:4477 ∙ OMIM:157145 ∙ HGNC:7372 ∙ Uniprot:P08118 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MSMB gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MSMB gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			3			3
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	3	0	0

Variants in MSMB

This is a list of pathogenic ClinVar variants found in the MSMB region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
10-46033458-T-A		not specified	Likely benign (Nov 10, 2024)
10-46033471-T-C		not specified	Uncertain significance (Dec 16, 2023)
10-46033540-G-A		not specified	Uncertain significance (Jul 14, 2021)
10-46039032-G-A		not specified	Uncertain significance (Jun 07, 2024)
10-46039998-C-T		not specified	Uncertain significance (Dec 10, 2024)
10-46040015-T-C		not specified	Uncertain significance (Aug 02, 2021)
10-46046326-A-A		Prostate cancer, hereditary, 13	risk factor (Oct 18, 2018)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.131

Intolerance Scores

• loftool: 0.663
• rvis_EVS: 0.01
• rvis_percentile_EVS: 54.63

Haploinsufficiency Scores

• pHI: 0.0229
• hipred: N
• hipred_score: 0.123
• ghis: 0.468

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.144

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Low	Low
Primary Immunodeficiency	Medium	Low	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Msmb
• Phenotype: endocrine/exocrine gland phenotype; reproductive system phenotype; neoplasm; immune system phenotype

Gene ontology

• Biological process: biological_process
• Cellular component: extracellular space;nucleus
• Molecular function: molecular_function;protein binding