MUC19

mucin 19, oligomeric, the group of Mucins

Basic information

Region (hg38): 12:40393394-40570832

Links

ENSG00000205592 ∙ NCBI:283463 ∙ OMIM:612170 ∙ HGNC:14362 ∙ Uniprot:Q7Z5P9 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MUC19 gene.

• not provided (34 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MUC19 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				18		18
missense				13		13
nonsense				1		1
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)				2		2
splice region						0
non coding						0
Total	0	0	0	34	0

Variants in MUC19

This is a list of pathogenic ClinVar variants found in the MUC19 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-40406049-C-T			Likely benign (Jun 01, 2022)
12-40408359-A-G			Likely benign (Jun 01, 2022)
12-40416343-T-A			Likely benign (Jun 01, 2022)
12-40416346-A-G			Likely benign (Jun 01, 2022)
12-40418143-G-A			Likely benign (Sep 01, 2022)
12-40431657-G-A			Likely benign (Feb 01, 2023)
12-40436694-G-A			Likely benign (May 01, 2022)
12-40441144-C-T			Likely benign (Feb 01, 2023)
12-40444415-G-A			Likely benign (Jun 01, 2022)
12-40450688-G-A			Likely benign (Jun 01, 2022)
12-40465588-T-C			Likely benign (May 01, 2022)
12-40479450-G-A			Likely benign (Mar 01, 2022)
12-40480581-T-C			Likely benign (Feb 01, 2023)
12-40482027-G-A			Likely benign (Mar 01, 2022)
12-40484892-A-T			Likely benign (Jun 01, 2022)
12-40485730-G-A			Likely benign (Oct 01, 2022)
12-40485746-C-T			Likely benign (Sep 01, 2022)
12-40485799-A-T			Likely benign (Jun 01, 2022)
12-40486351-T-G			Likely benign (Apr 01, 2022)
12-40486513-G-T			Likely benign (Feb 01, 2023)
12-40486582-A-G			Likely benign (Oct 01, 2022)
12-40489375-A-G			Likely benign (Oct 01, 2022)
12-40489900-A-T			Likely benign (Mar 01, 2024)
12-40490410-A-T			Likely benign (Mar 01, 2024)
12-40490503-G-C			Likely benign (Oct 01, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
MUC19	protein_coding	protein_coding	ENST00000454784	42	177436

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
6.22e-32	0.0137	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.487	620	655	0.946	0.0000317	21796
Missense in Polyphen		61	61.331	0.9946		3326
Synonymous	0.00950	232	232	0.999	0.0000121	8547
Loss of Function	1.66	57	72.2	0.789	0.00000374	1570

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May function in ocular mucus homeostasis. {ECO:0000269|PubMed:18184611}.
• Pathway: Post-translational protein modification;Dectin-2 family;Metabolism of proteins;C-type lectin receptors (CLRs);Innate Immune System;Immune System;Termination of O-glycan biosynthesis;O-linked glycosylation of mucins;O-linked glycosylation (Consensus)

Haploinsufficiency Scores

• pHI: 0.116
• ghis: 0.421

Essentials

• gene_indispensability_pred: N
• gene_indispensability_score: 0.123

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	High	High	High
Primary Immunodeficiency	High	High	High
Cancer	High	High	High

Mouse Genome Informatics

• Gene name: Muc19
• Phenotype: endocrine/exocrine gland phenotype; immune system phenotype; digestive/alimentary phenotype

Gene ontology

• Biological process: stimulatory C-type lectin receptor signaling pathway;O-glycan processing
• Cellular component: extracellular region;Golgi lumen;plasma membrane