MUSK
protein-codingmuscle associated receptor tyrosine kinase, the group of I-set domain containing|Immunoglobulin like domain containing|Receptor tyrosine kinases
Gene summary
This gene encodes a muscle-specific tyrosine kinase receptor. The encoded protein may play a role in clustering of the acetylcholine receptor in the postsynaptic neuromuscular junction. Mutations in this gene have been associated with congenital myasthenic syndrome. Alternatively spliced transcript variants have been described.[provided by RefSeq, Oct 2009]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~137.8 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AR
Disease ID:MONDO:0014587
Submitter: PanelApp Australia
Inheritance Pattern: AR
Disease ID:MONDO:0100101
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AR
Disease ID:MONDO:0014587
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AR
Disease ID:MONDO:0014587
Submitter: Genomics England PanelApp
Inheritance Pattern: AR
Disease ID:MONDO:0014587
Submitter: ClinGen
*MUSK* was first reported in relation to autosomal recessive congenital myasthenic syndrome in 2004 (PMID: 15496425) and fetal akinesia deformation sequence in 2015 (PMID: 25612909). Per criteria outlined by the ClinGen Lumping and Splitting Working Group, we found no difference in molecular mechanism and inheritance pattern. Therefore, the following disease entities have been lumped into one disease entity termed *MUSK*-related myasthenic syndrome: Congenital Myasthenic Syndrome 9 (MONDO:0014587) and Fetal akinesia deformation sequence 1 (MONDO:0100101). Seventeen variants (11 missense, 4 nonsense, 2 frameshift) that have been reported in twelve probands in nine publications (PMIDs: 15496425, 19949040, 20371544, 25537362, 25612909, 29704306, 30719842, 37091828, 37721175) are included in this curation. More evidence is available in the literature, but the maximum score for genetic evidence (12 pts.) has been reached. The mechanism of pathogenicity is reported to be loss of function via biallelic pathogenic variants that lead to deficient postsynaptic structure at the neuromuscular junction, defective acetylcholine receptor clustering and, ultimately, impairment of the signaling pathway (PMID: 38566418). This gene-disease relationship is also supported by animal models, expression studies, in vitro functional assays (PMIDs: 8653786, 18718936, 20371544, 23715323). Bulk tissue gene expression data from the GTEx Portal indicates *MUSK* is highly expressed in skeletal muscle (PMID: 23715323, dbGaP Accession phs000424.v10.p2). *MUSK* interacts with *DOK7*, a gene determined to be definitively associated with congenital myasthenic syndrome by ClinGen (PMID: 20371544). Transgenic knockout mice demonstrated immobility at birth with high mortality recapitulating the reduced intrauterine movement and fetal death in human cases of *MUSK*-related Fetal akinesia deformation sequence fetal FADS (PMID: 8653786). Futhermore, a transgenic mouse model of the murine p.V790M variant (human equivalent of *MUSK*:p.V789M) recapitulated the human congenital myasthenic syndrome (CMS) phenotype when the p.V790M variant was heterozygous with a loss-of-function allele (PMID: 18718936). In summary, there is definitive evidence supporting the relationship between *MUSK* and autosomal recessive *MUSK*-related congenital myasthenic syndrome. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. This classification was approved by the ClinGen Congenital Myopathies and Myasthenic Syndromes Gene Curation Expert Panel on the meeting date April, 27th, 2026 (SOP Version 12).
Inheritance Pattern: AR
Disease ID:MONDO:0100101
Submitter: Orphanet
Clinical Genomic Database (CGD)
Manifestation: Musculoskeletal; Neurologic
Intervention: Musculoskeletal; Neurologic; Pharmacogenomic
Rationale: Most individuals with Myasthenic syndrome, congenital benefit from AChE inhibitors and/or potassium channel blocker 3,4-diaminopyridine (3,4-DAP), though caution must be used in giving 3,4-DAP to young children and individuals with fast-channel syndromes; Some individuals are treated with quinidine, which has some major side effects and may be detrimental in individuals with AChR deficiency
Comments: Allelic with Fetal akinesia deformation sequence 2 (AR) likely represents an extreme phenotype of Myasthenic syndrome, congenital, 9, associated with acetylcholine receptor deficiency
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to MUSK variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_005592.4. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 1 | 230 | 3 | 234 | ||
| missense | 2 | 18 | 305 | 28 | 2 | 355 |
| nonsense | 13 | 6 | 1 | 20 | ||
| start loss | 1 | 1 | ||||
| frameshift | 19 | 9 | 28 | |||
| splice donor/acceptor (+/-2bp) | 1 | 14 | 15 | |||
| Total | 36 | 47 | 307 | 258 | 5 | 653 |
Highest pathogenic variant AF is 0.00012578398
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_005583.1 | 15 | MANE Select | |
| Ensembl | ENSP00000363571.4 | 15 | MANE Select | |
| RefSeq | NP_001159752.1 | 14 | Standard | |
| RefSeq | NP_001159753.1 | 13 | Standard |
Model Organisms & Knockout Phenotypes
Observed phenotypic effects in mouse and zebrafish models
| Gene / Model | Organism | Observed Phenotype |
|---|---|---|
| musk | Danio rerio | Structure: primary motor neuron Quality: morphology abnormal |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Extracellular matrix organization
- role of nicotinic acetylcholine receptors in the regulation of apoptosis
- agrin in postsynaptic differentiation
- ECM proteoglycans
Biological Process
- positive regulation of protein phosphorylation
- transmembrane receptor protein tyrosine kinase signaling pathway
- multicellular organism development
- neuromuscular junction development
- memory
Molecular Function
- protein tyrosine kinase activity
- transmembrane receptor protein tyrosine kinase activity
- protein binding
- ATP binding
- Wnt-protein binding
Cellular Component
- integral component of plasma membrane
- cell junction
- neuromuscular junction
- receptor complex
- postsynaptic membrane
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000374448
- Coding exons
- 15
- Length
- 132809
- Individuals with no LoFs
- 124609
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 56
- Defined
- 124665
- p
- 0.000225
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 1.09 | 409 | 476 | 0.859 | 0.0000251 | 5668 |
| Missense (PolyPhen) | 191 | 214.89 | 0.88881 | 2545 | ||
| Synonymous | 0.710 | 170 | 182 | 0.933 | 0.0000103 | 1724 |
| Loss of Function | 3.07 | 19 | 39.9 | 0.476 | 0.00000218 | 477 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.00026 | 0.00026 | rare |
| Latino/Admixed American | 0.00012 | 0.000087 | rare |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0.00033 | 0.00033 | rare |
| Finnish | 0 | 0.0 | absent |
| European (Non-Finnish) | 0.00029 | 0.00029 | rare |
| South Asian | 0.00029 | 0.00029 | rare |
| Other | 0.00017 | 0.00017 | rare |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Receptor tyrosine kinase which plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between the motor neuron and the skeletal muscle (PubMed:25537362). Recruitment of AGRIN by LRP4 to the MUSK signaling complex induces phosphorylation and activation of MUSK, the kinase of the complex. The activation of MUSK in myotubes regulates the formation of NMJs through the regulation of different processes including the specific expression of genes in subsynaptic nuclei, the reorganization of the actin cytoskeleton and the clustering of the acetylcholine receptors (AChR) in the postsynaptic membrane. May regulate AChR phosphorylation and clustering through activation of ABL1 and Src family kinases which in turn regulate MUSK. DVL1 and PAK1 that form a ternary complex with MUSK are also important for MUSK-dependent regulation of AChR clustering. May positively regulate Rho family GTPases through FNTA. Mediates the phosphorylation of FNTA which promotes prenylation, recruitment to membranes and activation of RAC1 a regulator of the actin cytoskeleton and of gene expression. Other effectors of the MUSK signaling include DNAJA3 which functions downstream of MUSK. May also play a role within the central nervous system by mediating cholinergic responses, synaptic plasticity and memory formation (By similarity). {ECO:0000250, ECO:0000269|PubMed:25537362}.;
- Disease
- DISEASE: Myasthenic syndrome, congenital, 9, associated with acetylcholine receptor deficiency (CMS9) [MIM:616325]: A form of congenital myasthenic syndrome, a group of disorders characterized by failure of neuromuscular transmission, including pre-synaptic, synaptic, and post-synaptic disorders that are not of autoimmune origin. Clinical features are easy fatigability and muscle weakness affecting the axial and limb muscles (with hypotonia in early-onset forms), the ocular muscles (leading to ptosis and ophthalmoplegia), and the facial and bulbar musculature (affecting sucking and swallowing, and leading to dysphonia). The symptoms fluctuate and worsen with physical effort. CMS9 is a disorder of postsynaptic neuromuscular transmission, due to deficiency of AChR at the endplate that results in low amplitude of the miniature endplate potential and current. {ECO:0000269|PubMed:15496425, ECO:0000269|PubMed:19949040, ECO:0000269|PubMed:20371544, ECO:0000269|PubMed:23326516, ECO:0000269|PubMed:24183479}. Note=The disease is caused by mutations affecting the gene represented in this entry. MUSK mutations lead to decreased agrin- dependent AChR aggregation, a critical step in the formation of the neuromuscular junction.; DISEASE: Fetal akinesia deformation sequence (FADS) [MIM:208150]: A clinically and genetically heterogeneous group of disorders with congenital malformations related to impaired fetal movement. Clinical features include fetal akinesia, intrauterine growth retardation, polyhydramnios, arthrogryposis, pulmonary hypoplasia, craniofacial abnormalities, and cryptorchidism. {ECO:0000269|PubMed:25537362, ECO:0000269|PubMed:25612909}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Recessive Scores
- pRec
- 0.779
Intolerance Scores
- LoFtool
- 0.392
- RVIS EVS
- 0.52
- RVIS percentile EVS
- 80.34
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.671
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |