MUSK

protein-coding

muscle associated receptor tyrosine kinase, the group of I-set domain containing|Immunoglobulin like domain containing|Receptor tyrosine kinases

Gene summary

This gene encodes a muscle-specific tyrosine kinase receptor. The encoded protein may play a role in clustering of the acetylcholine receptor in the postsynaptic neuromuscular junction. Mutations in this gene have been associated with congenital myasthenic syndrome. Alternatively spliced transcript variants have been described.[provided by RefSeq, Oct 2009]

MANE transcript

NM_005592.4

Inheritance

AR

ClinVar variants

P:83U:307B:263

Top phenotype

Myasthenic syndrome, congenital, 9, associated with acetylcholine receptor deficiency

gnomAD constraint

pLI —, LoF o/e 0.48

Max pathogenic AF

—

Genomic locus

chr9:110,668,779-110,806,558

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~137.8 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

congenital myasthenic syndrome 9STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0014587

Submitter: PanelApp Australia

fetal akinesia deformation sequence 1STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0100101

Submitter: Labcorp Genetics (formerly Invitae)

congenital myasthenic syndrome 9STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0014587

Submitter: Labcorp Genetics (formerly Invitae)

congenital myasthenic syndrome 9STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0014587

Submitter: Genomics England PanelApp

congenital myasthenic syndrome 9DEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0014587

Submitter: ClinGen

*MUSK* was first reported in relation to autosomal recessive congenital myasthenic syndrome in 2004 (PMID: 15496425) and fetal akinesia deformation sequence in 2015 (PMID: 25612909). Per criteria outlined by the ClinGen Lumping and Splitting Working Group, we found no difference in molecular mechanism and inheritance pattern. Therefore, the following disease entities have been lumped into one disease entity termed *MUSK*-related myasthenic syndrome: Congenital Myasthenic Syndrome 9 (MONDO:0014587) and Fetal akinesia deformation sequence 1 (MONDO:0100101). Seventeen variants (11 missense, 4 nonsense, 2 frameshift) that have been reported in twelve probands in nine publications (PMIDs: 15496425, 19949040, 20371544, 25537362, 25612909, 29704306, 30719842, 37091828, 37721175) are included in this curation. More evidence is available in the literature, but the maximum score for genetic evidence (12 pts.) has been reached. The mechanism of pathogenicity is reported to be loss of function via biallelic pathogenic variants that lead to deficient postsynaptic structure at the neuromuscular junction, defective acetylcholine receptor clustering and, ultimately, impairment of the signaling pathway (PMID: 38566418). This gene-disease relationship is also supported by animal models, expression studies, in vitro functional assays (PMIDs: 8653786, 18718936, 20371544, 23715323). Bulk tissue gene expression data from the GTEx Portal indicates *MUSK* is highly expressed in skeletal muscle (PMID: 23715323, dbGaP Accession phs000424.v10.p2). *MUSK* interacts with *DOK7*, a gene determined to be definitively associated with congenital myasthenic syndrome by ClinGen (PMID: 20371544). Transgenic knockout mice demonstrated immobility at birth with high mortality recapitulating the reduced intrauterine movement and fetal death in human cases of *MUSK*-related Fetal akinesia deformation sequence fetal FADS (PMID: 8653786). Futhermore, a transgenic mouse model of the murine p.V790M variant (human equivalent of *MUSK*:p.V789M) recapitulated the human congenital myasthenic syndrome (CMS) phenotype when the p.V790M variant was heterozygous with a loss-of-function allele (PMID: 18718936). In summary, there is definitive evidence supporting the relationship between *MUSK* and autosomal recessive *MUSK*-related congenital myasthenic syndrome. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. This classification was approved by the ClinGen Congenital Myopathies and Myasthenic Syndromes Gene Curation Expert Panel on the meeting date April, 27th, 2026 (SOP Version 12).

fetal akinesia deformation sequence 1SUPPORTIVE

Inheritance Pattern: AR

Disease ID:MONDO:0100101

Submitter: Orphanet

Clinical Genomic Database (CGD)

Myasthenic syndrome, congenital, 9, associated with acetylcholine receptor deficiencyAR

Manifestation: Musculoskeletal; Neurologic

Intervention: Musculoskeletal; Neurologic; Pharmacogenomic

Rationale: Most individuals with Myasthenic syndrome, congenital benefit from AChE inhibitors and/or potassium channel blocker 3,4-diaminopyridine (3,4-DAP), though caution must be used in giving 3,4-DAP to young children and individuals with fast-channel syndromes; Some individuals are treated with quinidine, which has some major side effects and may be detrimental in individuals with AChR deficiency

Comments: Allelic with Fetal akinesia deformation sequence 2 (AR) likely represents an extreme phenotype of Myasthenic syndrome, congenital, 9, associated with acetylcholine receptor deficiency

Refs: 1783919; 8041349; 9120223; 8819551; 9546329; 12771277; 15496425; 15951177; 20301347; 25537362; 25612909Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to MUSK variants in ClinVar

13 Conditions Cataloged
Congenital myasthenic syndrome 9Total: 712
Fetal akinesia deformation sequence 1Total: 700
not providedTotal: 149
Inborn genetic diseasesTotal: 126
not specifiedTotal: 46
MUSK-related disorderTotal: 30
StridorTotal: 2
Delayed gross motor developmentTotal: 2

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_005592.4. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
230
clinvar
3
clinvar
234
missense
2
clinvar
18
clinvar
305
clinvar
28
clinvar
2
clinvar
355
nonsense
13
clinvar
6
clinvar
1
clinvar
20
start loss
1
clinvar
1
frameshift
19
clinvar
9
clinvar
28
splice donor/acceptor (+/-2bp)
1
clinvar
14
clinvar
15
Total36473072585653

Highest pathogenic variant AF is 0.00012578398

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 16 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_005592.4RefSeqNP_005583.115MANE Select
ENST00000374448.9EnsemblENSP00000363571.415MANE Select
NM_001166280.2RefSeqNP_001159752.114Standard
NM_001166281.2RefSeqNP_001159753.113Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
muskDanio rerio

Structure: primary motor neuron

Quality: morphology

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Extracellular matrix organization
  • role of nicotinic acetylcholine receptors in the regulation of apoptosis
  • agrin in postsynaptic differentiation
  • ECM proteoglycans

Biological Process

  • positive regulation of protein phosphorylation
  • transmembrane receptor protein tyrosine kinase signaling pathway
  • multicellular organism development
  • neuromuscular junction development
  • memory

Molecular Function

  • protein tyrosine kinase activity
  • transmembrane receptor protein tyrosine kinase activity
  • protein binding
  • ATP binding
  • Wnt-protein binding

Cellular Component

  • integral component of plasma membrane
  • cell junction
  • neuromuscular junction
  • receptor complex
  • postsynaptic membrane

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000374448
Coding exons
15
Length
132809
Individuals with no LoFs
124609
Homozygous LoFs
0
Heterozygous LoFs
56
Defined
124665
p
0.000225
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense1.094094760.8590.00002515668
Missense (PolyPhen)191214.890.888812545
Synonymous0.7101701820.9330.00001031724
Loss of Function3.071939.90.4760.00000218477

Population LoF Frequency

PopulationCAFp-valueStatus
African0.000260.00026rare
Latino/Admixed American0.000120.000087rare
Ashkenazi Jewish00.0absent
East Asian0.000330.00033rare
Finnish00.0absent
European (Non-Finnish)0.000290.00029rare
South Asian0.000290.00029rare
Other0.000170.00017rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Receptor tyrosine kinase which plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between the motor neuron and the skeletal muscle (PubMed:25537362). Recruitment of AGRIN by LRP4 to the MUSK signaling complex induces phosphorylation and activation of MUSK, the kinase of the complex. The activation of MUSK in myotubes regulates the formation of NMJs through the regulation of different processes including the specific expression of genes in subsynaptic nuclei, the reorganization of the actin cytoskeleton and the clustering of the acetylcholine receptors (AChR) in the postsynaptic membrane. May regulate AChR phosphorylation and clustering through activation of ABL1 and Src family kinases which in turn regulate MUSK. DVL1 and PAK1 that form a ternary complex with MUSK are also important for MUSK-dependent regulation of AChR clustering. May positively regulate Rho family GTPases through FNTA. Mediates the phosphorylation of FNTA which promotes prenylation, recruitment to membranes and activation of RAC1 a regulator of the actin cytoskeleton and of gene expression. Other effectors of the MUSK signaling include DNAJA3 which functions downstream of MUSK. May also play a role within the central nervous system by mediating cholinergic responses, synaptic plasticity and memory formation (By similarity). {ECO:0000250, ECO:0000269|PubMed:25537362}.;
Disease
DISEASE: Myasthenic syndrome, congenital, 9, associated with acetylcholine receptor deficiency (CMS9) [MIM:616325]: A form of congenital myasthenic syndrome, a group of disorders characterized by failure of neuromuscular transmission, including pre-synaptic, synaptic, and post-synaptic disorders that are not of autoimmune origin. Clinical features are easy fatigability and muscle weakness affecting the axial and limb muscles (with hypotonia in early-onset forms), the ocular muscles (leading to ptosis and ophthalmoplegia), and the facial and bulbar musculature (affecting sucking and swallowing, and leading to dysphonia). The symptoms fluctuate and worsen with physical effort. CMS9 is a disorder of postsynaptic neuromuscular transmission, due to deficiency of AChR at the endplate that results in low amplitude of the miniature endplate potential and current. {ECO:0000269|PubMed:15496425, ECO:0000269|PubMed:19949040, ECO:0000269|PubMed:20371544, ECO:0000269|PubMed:23326516, ECO:0000269|PubMed:24183479}. Note=The disease is caused by mutations affecting the gene represented in this entry. MUSK mutations lead to decreased agrin- dependent AChR aggregation, a critical step in the formation of the neuromuscular junction.; DISEASE: Fetal akinesia deformation sequence (FADS) [MIM:208150]: A clinically and genetically heterogeneous group of disorders with congenital malformations related to impaired fetal movement. Clinical features include fetal akinesia, intrauterine growth retardation, polyhydramnios, arthrogryposis, pulmonary hypoplasia, craniofacial abnormalities, and cryptorchidism. {ECO:0000269|PubMed:25537362, ECO:0000269|PubMed:25612909}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.779

Intolerance Scores

LoFtool
0.392
RVIS EVS
0.52
RVIS percentile EVS
80.34

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Indispensability pred.
E
Indispensability score
0.671

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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