MYH6
protein-codingmyosin heavy chain 6, the group of Myosin heavy chains, class II|MicroRNA protein coding host genes
Gene summary
Cardiac muscle myosin is a hexamer consisting of two heavy chain subunits, two light chain subunits, and two regulatory subunits. This gene encodes the alpha heavy chain subunit of cardiac myosin. The gene is located approximately 4kb downstream of the gene encoding the beta heavy chain subunit of cardiac myosin. Mutations in this gene cause familial hypertrophic cardiomyopathy and atrial septal defect 3. [provided by RefSeq, Feb 2017]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~26.3 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AD
Disease ID:MONDO:0013197
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:0024573
Submitter: G2P
Inheritance Pattern: AD
Disease ID:MONDO:0013567
Submitter: G2P
Inheritance Pattern: AD
Disease ID:MONDO:0015470
Submitter: Orphanet
Inheritance Pattern: AD
Disease ID:MONDO:0013572
Submitter: Illumina
Inheritance Pattern: AD
Disease ID:MONDO:0005045
Submitter: ClinGen
MYH6 was first reported in association with autosomal dominant hypertrophic cardiomyopathy (HCM) in humans in 2002 (Niimura et al. 2002, PMID 11815426). MYH6 gene encodes alpha heavy chain subunit of cardiac myosin (MHC-α), which are actin-based molecular motors that convert chemical energy released from the hydrolysis of ATP. It has been associated with HCM in 3 probands in 2 publications. Four unique heterozygous missense variants have been reported in humans with limited evidence to support their pathogenicity (Niimura et al. 2002, PMID 11815426; Rubattu et al. 2016, PMID 27483260; Wang et al. 2020 PMID 33385793). Additional missense variants have been reported in humans, but were not scored because probands have variants in another HCM gene (Rubattu et al. 2016, PMID 27483260; Liu et al. 2021, PMID 34087240; Suzuki et al. 2022, PMID 35911064), or high frequency in the population (Carniel et al. 2005, PMID 15998695). The mechanism for disease remains unknown. The gene-disease association is supported by expression studies in the human heart (Gorza, et al. 1984, PMID 6234108) and biochemical function showing MHC-α interactions with ATP, actin and the light chains (Weiss et al. 1999, PMID 10388558). Additional studies on mice models of HCM using pre-engineered heterozygous, pathogenic MYH7 variant orthologous to the human p.R403Q allele into the mouse MYH6 were reviewed, but not scored because these mice models are not analogous to human MYH6 (Geisterfer-Lowrance et al. 1996, PMID 8614836; Jiang, et al. 2013 PMID 24092743). This classification was originally approved by the ClinGen Hypertrophic Cardiomyopathy Gene Curation Expert Panel on November 1, 2017, with a classification of “Limited”. It was reevaluated by the ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel on July 12, 2023. As a result of this reevaluation, the classification was changed from “Limited” to “Disputed” due to absence of new compelling genetic and experimental evidence.
Inheritance Pattern: AD
Disease ID:MONDO:0013198
Submitter: ClinGen
MYH6 was originally evaluated for DCM by the ClinGen DCM GCEP on 9/4/2020. Evidence of the association of this gene with DCM was re-evaluated using SOP v10 on 3/6/2025. As a result, the classification did not change. A summary of the information contributing to the classification of this gene at the time of re-evaluation is summarized herein. MYH6 was evaluated for autosomal dominant dilated cardiomyopathy (DCM). The MYH6 gene encodes the alpha heavy chain subunit of cardiac myosin (alpha-MHC), a fast ATPase primarily expressed in human atrial tissue. In addition to DCM, MYH6 has also been reported with congenital heart defects at the time of review. MYH6 has also been curated by the Congenital Heart Disease Gene Curation Expert Panel for MYH6-related congenital heart defects (definitive, May 2023) and by the Hereditary Cardiovascular Disease Gene Curation Expert Panel for hypertrophic cardiomyopathy (disputed, July, 2023). This was considered in accordance with ClinGen lumping and splitting criteria. Due to the distinct differences in phenotype for congenital heart disease versus DCM and due to disputed classification for HCM which also carries distinct phenotypic differences, the curation was split and curated for autosomal dominant DCM. Human genetic evidence supporting this gene-disease relationship includes case-level data. At time of this curation, there have been more than 60 unique variants (including majority missense (60/65), (2/65) nonsense, frameshift (1/65) and splice variants (2/65)) reported in humans with DCM across 11 primary publications. Given MYH6 has a high background of rare variation (approximate variation rate of 2%) with majority of reported variation being missense, additional supporting evidence was considered for case-level evidence for DCM including functional data, segregation data, or presence of additional, unrelated DCM cases harboring the same MYH6 variant. Functional evidence was reported in one primary publication. In brief, two MYH6 variants were functionally analyzed using adenovirus infected rat ventricular cardiomyocytes; however, evidence was not aberrant for the NM_002471.3(MYH6): c.2489C>T p.(Pro830Leu) variant and the other variant analyzed, NM_002471.3(MYH6): c.3010G>T p.Ala1004Ser, was not considered causative for DCM as due to high frequency in gnomAD (1769x in 1614160 reference alleles in version 4) and therefore were not scored for case-level evidence. At time of this curation, 6 of the primary publications had human genetic evidence for case level data for DCM detailing 6 unique missense variants with additional supporting evidence (PMID: 15998695, 20215591, 25163546, 28416588, 31983221, 34011823) and 3 unique, rare, predicted loss of function variants (PMID: 31983221, 34011823). For the missense variants observed in these cases, all supporting evidence was the presence of additional, unrelated DCM cases harboring a respective variant. Functional evidence was not available in scorable variants that supported pathogenicity. Additional experimental evidence supports this gene-disease association, including expression studies and animal models. Expression evidence in DCM literature is available across 3 primary publications. In brief, Lowes et al. 1997 detailed non-failing human ventricular myocardium expresses substantial amounts of alpha-myosin heavy chain mRNA (alpha-MHC, 23–34% of total) and in heart failure alpha-MHC is downregulated (by 67–84%) and beta-MHC gene expression is upregulated (PMID: 9410910). Similarly, Miyata et al. 2000, detailed alpha-MyHC protein was easily detectable in 12 nonfailing left ventricles. Alpha-MyHC protein represented only 7.3% of total MyHC protein (compared with ~35% of the MyHC mRNA), suggesting that translational regulation may be operative; in contrast, there was effectively no detectable alpha-MyHC protein in the left ventricles of 10 end-stage failing human hearts (PMID 10700442). Most recently Schiano et al. investigated transcriptomic profiles of 11 patients undergoing heart transplantation for familial DCM were compared versus controls utilizing a computational approach with quantitative real-time PCR validation. These results indicated downregulation of MYH6 in DCM-hearts compared to controls (PMID: 34946895). Animal model data was available from 1 primary publication. In brief, Carroll et al., 2016 investigated knockdown of Myh6 in postnatal mouse heart using Myh6 (promotor)-Cas9 mice intraperitoneally injected with AAV9 (adenovirus) encoded single guided RNA against Myh6 at postnatal day 10 quickly and efficiently induces massive cardiac dilation and heart failure, within 3 weeks of AAV delivery of sgRNA (Carroll et al, 2016, 26719419). However, limitations of this interpretation of this evidence are present as the major isoform in the adult mouse ventricle is alpha-Mhc, whereas in the human the major isoform is beta-MHC. In summary, there is limited evidence to support this gene-disease relationship. More evidence is needed to support the relationship of MYH6 with autosomal dominant DCM. This classification was approved by the ClinGen Dilated Cardiomyopathy Working Group on 3/6/2025 (SOP Version 10).
Inheritance Pattern: AD
Disease ID:MONDO:0013197
Submitter: Laboratory for Molecular Medicine
This gene-disease relationship has undergone rapid assessment. Classifications are based on preliminary review of gene-disease validity during analysis of genomic sequencing results.
Inheritance Pattern: AD
Disease ID:MONDO:0016333
Submitter: G2P
Inheritance Pattern: AD
Disease ID:MONDO:0013197
Submitter: PanelApp Australia
Inheritance Pattern: AD
Disease ID:MONDO:0800442
Submitter: ClinGen
MYH6 was first reported in relation to autosomal dominant congenital heart defects in 2005 (Ching et al. 2005, PMID: 15735645). The MYH6 gene encodes the alpha heavy chain subunit of cardiac myosin (alpha-MHC), a fast ATPase primarily expressed in human atrial tissue. Cardiac myosin is one of the major components of the cardiac sarcomere. Variants in MYH6 have been associated with multiple types of congenital heart disease including atrial septal defects (ASD), atrioventricular septal defects, conotruncal defects, tricuspid atresia and left sided obstructive lesions. Per criteria outlined by the ClinGen Lumping and Splitting Working Group, Atrial Septal Defect 3 (OMIM:614089) is included in the curation with autosomal dominant MYH6 related congenital heart defects. The split curation for autosomal recessive MYH6 related congenital heart defects has been curated separately. The split curations for MYH6-dilated cardiomyopathy and MYH6 – hypertrophic cardiomyopathy have been previously reported. 21 variants including missense, nonsense, and splice site variants reported in 21 probands in 11 publications (PMIDs: 15735645, 22194935, 29969989, 31638415, 34481090, 29536580, 20656787, 22337856, 35863714, 27789736, 28991257) are included in this curation using an allele frequency threshold of 1x10-5. One case control study with 452 cases of atrial septal defect and 519 healthy controls found a nonsense variant in MYH6 that was significantly associated with ASD (PMID: 29505555). This gene-disease relationship is also supported by protein interaction studies, fetal expression in mice, animal models and functional alteration in patient cells (PMIDs: 15735645, 11247796, 15735645, 31129720, 19769958, 32656206). Additional experimental data are available but the maximum experimental score was reached. The mechanism of disease is unknown. In summary, there is definitive evidence supporting the relationship between MYH6 and autosomal dominant congenital heart defects. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. This classification was approved by the ClinGen Congenital Heart Disease GCEP on the meeting date May 9, 2023. (SOP Version 9).
Inheritance Pattern: AD
Disease ID:MONDO:0006664
Submitter: PanelApp Australia
Clinical Genomic Database (CGD)
Manifestation: Cardiovascular
Intervention: Cardiovascular
Rationale: In Cardiomyopathy, permanent cardiac pacing is the only effective treatment for symptomatic/irreversible sinus node dysfunction; Sick sinus syndrome is the most common indication for permanent pacemaker implantation; In Atrial septal defect, individuals may require surgical and other interventions, and diagnosis may allow prompt management
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to MYH6 variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_002471.4. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 1 | 12 | 731 | 17 | 761 | |
| missense | 4 | 3 | 1549 | 95 | 7 | 1658 |
| nonsense | 3 | 42 | 45 | |||
| start loss | 1 | 1 | ||||
| frameshift | 2 | 1 | 60 | 63 | ||
| splice donor/acceptor (+/-2bp) | 1 | 4 | 43 | 1 | 49 | |
| Total | 7 | 12 | 1707 | 827 | 24 | 2577 |
Highest pathogenic variant AF is 0.0000065766108
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_002462.2 | 37 | MANE Select | |
| Ensembl | ENSP00000386041.3 | 37 | MANE Select | |
| Ensembl | ENSP00000638309.1 | 37 | Standard | |
| Ensembl | ENSP00000638309.1 | 37 | Standard |
Model Organisms & Knockout Phenotypes
Observed phenotypic effects in mouse and zebrafish models
| Gene / Model | Organism | Observed Phenotype |
|---|---|---|
| myh6 | Danio rerio | Structure: cardiac muscle cell Quality: has fewer parts of type abnormal |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Cardiac muscle contraction - Homo sapiens (human)
- Dilated cardiomyopathy (DCM) - Homo sapiens (human)
- Viral myocarditis - Homo sapiens (human)
- Hypertrophic cardiomyopathy (HCM) - Homo sapiens (human)
- Thyroid hormone signaling pathway - Homo sapiens (human)
Biological Process
- in utero embryonic development
- regulation of the force of heart contraction
- regulation of heart rate
- protein dephosphorylation
- muscle contraction
Molecular Function
- microfilament motor activity
- calmodulin binding
- ATP binding
- ATPase activity
- myosin phosphatase activity
Cellular Component
- stress fiber
- cytosol
- muscle myosin complex
- myosin complex
- myofibril
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000405093
- Coding exons
- 37
- Length
- 26288
- Individuals with no LoFs
- 125589
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 159
- Defined
- 125748
- p
- 0.000632
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 0.858 | 1040 | 1.12e+3 | 0.928 | 0.0000809 | 12829 |
| Missense (PolyPhen) | 438 | 475.06 | 0.92199 | 5314 | ||
| Synonymous | -2.30 | 533 | 470 | 1.14 | 0.0000338 | 3618 |
| Loss of Function | 2.72 | 65 | 93.3 | 0.697 | 0.00000459 | 1176 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.0018 | 0.0018 | notable |
| Latino/Admixed American | 0.00052 | 0.00052 | rare |
| Ashkenazi Jewish | 0.0012 | 0.0012 | notable |
| East Asian | 0.0012 | 0.0011 | notable |
| Finnish | 0.000050 | 0.000046 | rare |
| European (Non-Finnish) | 0.00048 | 0.00047 | rare |
| South Asian | 0.00059 | 0.00059 | rare |
| Other | 0.0011 | 0.00098 | notable |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Muscle contraction.;
- Disease
- DISEASE: Atrial septal defect 3 (ASD3) [MIM:614089]: A congenital heart malformation characterized by incomplete closure of the wall between the atria resulting in blood flow from the left to the right atria. {ECO:0000269|PubMed:15735645}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Cardiomyopathy, familial hypertrophic 14 (CMH14) [MIM:613251]: A hereditary heart disorder characterized by ventricular hypertrophy, which is usually asymmetric and often involves the interventricular septum. The symptoms include dyspnea, syncope, collapse, palpitations, and chest pain. They can be readily provoked by exercise. The disorder has inter- and intrafamilial variability ranging from benign to malignant forms with high risk of cardiac failure and sudden cardiac death. {ECO:0000269|PubMed:11815426, ECO:0000269|PubMed:15998695}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Cardiomyopathy, dilated 1EE (CMD1EE) [MIM:613252]: A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. {ECO:0000269|PubMed:15998695}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Sick sinus syndrome 3 (SSS3) [MIM:614090]: The term 'sick sinus syndrome' encompasses a variety of conditions caused by sinus node dysfunction. The most common clinical manifestations are syncope, presyncope, dizziness, and fatigue. Electrocardiogram typically shows sinus bradycardia, sinus arrest, and/or sinoatrial block. Episodes of atrial tachycardias coexisting with sinus bradycardia ('tachycardia-bradycardia syndrome') are also common in this disorder. SSS occurs most often in the elderly associated with underlying heart disease or previous cardiac surgery, but can also occur in the fetus, infant, or child without heart disease or other contributing factors. {ECO:0000269|PubMed:21378987}. Note=Disease susceptibility is associated with variations affecting the gene represented in this entry. The lifetime risk of being diagnosed with sick sinus syndrome is higher for carriers of variant p.Arg721Trp than for non-carriers. {ECO:0000269|PubMed:21378987}.;
Recessive Scores
- pRec
- 0.116
Intolerance Scores
- LoFtool
- 0.0684
- RVIS EVS
- -2.78
- RVIS percentile EVS
- 0.66
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.793
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | High | Medium | High |
| Primary Immunodeficiency | High | High | High |
| Cancer | High | High | High |