MYL2

protein-coding

myosin light chain 2, the group of Myosin light chains, class 2

Gene summary

This gene encodes a major sarcomeric protein in mammalian striated muscle. The encoded protein plays a role in embryonic heart muscle structure and function, while phosphorylation of the encoded protein is involved in cardiac myosin cycling kinetics, torsion and function in adults. Mutations in this gene are associated with hypertrophic cardiomyopathy 10 and infant-onset myopathy. [provided by RefSeq, May 2022]

MANE transcript

NM_000432.4

Inheritance

AD, AR

ClinVar variants

P:34U:304B:98

Top phenotype

Cardiomyopathy, familial hypertrophic, 10

gnomAD constraint

pLI —, LoF o/e 1.11

Max pathogenic AF

—

Genomic locus

chr12:110,909,996-111,052,434

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~142.4 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

congenital fiber-type disproportion myopathySUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0009711

Submitter: Orphanet

familial dilated cardiomyopathyLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0016333

Submitter: G2P

myopathy, myofibrillar, 12, infantile-onset, with cardiomyopathyMODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0859168

Submitter: Ambry Genetics

arrhythmogenic right ventricular cardiomyopathyNO_KNOWN

Inheritance Pattern: AD

Disease ID:MONDO:0016587

Submitter: ClinGen

MYL2: Arrhythmogenic Right Ventricular Cardiomyopathy (ARVC) HGNC: 7583 http://purl.obolibrary.org/obo/MONDO_0016587 Mode of Inheritance: Autosomal dominant inheritance (HP:0000006) Expert Panel: Arrhythmogenic Right Ventricular Cardiomyopathy SOP: Gene Clinical Validity Standard Operating Procedures (SOP), Version 6 Calculated Classification (date) No reported evidence 22/03/2019 Evidence Summary: There is no evidence that MYL2 is involved in ARVC. This gene has been investigated for pathogenic variants in two populations of gene-elusive ARVC patients: a cohort of 14 Spanish unrelated patients (22421524) and a cohort of 137 ARVC patients meeting 2010 Task Force criteria for ARVC (29709087). No variants in MYL2 were reported.

hypertrophic cardiomyopathyDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0005045

Submitter: ClinGen

The MYL2 gene has been associated with autosomal dominant hypertrophic cardiomyopathy (HCM) in at least 40 probands in 10 publications (Poetter et al, 1996, PMID 8673105; Flavigny et al, 1998, PMID 9535554; Kabaeva et al, 2002, PMID 12404107; Richard et al, 2003, PMID 12707239; Morner et al, 2003, PMID 12818575; Garcia-Pavia et al, 2011, PMID 21896538; Santos et al, 2012, PMID 22429680; Berge et al, 2013, PMID 24111713; Lopes et al, 2015, PMID 25351510; Claes et al, 2015, PMID 26497160). More than 8 unique variants (missense, splice site, nonsense, frameshift) have been identified in humans, and convincing segregation data has been reported (Flavigny et al, 1998, PMID 9535554). In addition, at least 8 missense VUSs in MYL2 have been reported in patients with HCM. MYL2 was first associated with HCM in humans in 1996 (Poetter et al, 1996, PMID 8673105). The MYL2 gene was significantly enriched for missense variants in Walsh et al, 2016 (PMID 27532257) with and odds ratio of 6.74 (95% CI 4.69-9.70) for non-truncating variants and 3.10 (95% CI 0.89-10.7) for truncating variants. This gene-disease association is supported by expression data (Price et al, 1980, PMID 7236212), interaction with other known HCM gene products (MYH7, MYL3) (Rayment et al, 1993, PMID 8316857), and animal models (Szczesna-Cordary et al, 2005, PMID 16076902; Wang et al, 2006, 16837010; Kerrick et al, 2009, PMID 18987303). In summary, MYL2 is definitively associated with autosomal dominant HCM. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. This classification was originally approved by the ClinGen Hypertrophic Cardiomyopathy Gene Curation Expert Panel on February 7th, 2017 using SOP version 4. It was reevaluated on July 7th, 2021. As a result of this reevaluation, the classification did not change. This classification was last reevaluated on January 8th, 2021 using SOP11 to update the case scoring. As a result, several cases carrying the Glu22Lys variant were downscored due to evidence of founder status (PMID 26497160). Alternatively, the Arg58Gln variant has been obvserved multiple times in unrelated probands with consistent phenotypes and no evidence of shared ancestry so cases carrying the variant have increased scores to reflect the possibility that the locus is a hot spot. As a result of this reevaluation, the definitive classification did not change.

dilated cardiomyopathyLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0005021

Submitter: ClinGen

MYL2 was first reported in relation to autosomal dominant (AD) dilated cardiomyopathy (DCM) in 2015 (Huang et al., 2015, PMID 25825243). MYL2 was originally evaluated for DCM by the ClinGen DCM GCEP on September 11, 2020. Evidence of the association of this gene with DCM was re-evaluated using SOP v10 on May 16, 2025. As a result, the classification did not change. A summary of the information contributing to the classification of this gene at the time of re-evaluation is summarized herein. In addition to DCM, MYL2 has also been reported with hypertrophic cardiomyopathy and myofibrillar myopathy at the time of review. This was considered in accordance with ClinGen lumping and splitting criteria. Due to the distinct differences in phenotypic variability the curation was split and curated for AD DCM. Human genetic evidence supporting this gene-disease relationship includes case-level data. At least one missense variant has been reported in humans with DCM. Huang et al., (2015, PMID 25825243) reported p.Asp94Ala in three family members with DCM. In addition, this gene-disease assertion is supported by animal models, expression studies, and protein interaction studies. MYL2 has been shown to be expressed in cardiac tissue (Price et al., 1980, PMID 7236212, Chen et al., 1998, PMID 9422794, Rottbauer et al, 2006, PMID 16809551). It has been shown MYL2 interacts with MYH7 (Rayment et al., 1993, PMID: 8316857, Huang et al., 2015, PMID: 25825243). Yuan et al., reported an heterozygous mouse model with the p.Asp94Ala variant where the mice developed DCM (2018, PMID 29463717). Three other animal models have been reported but all were knockout models and consequently only 0.5 pts were awarded for each model (Chen et al., 1998, PMID 9422794, Rottbauer et al, 2006, PMID 16809551, Sheikh et al., 2012, PMID 22426213). In summary, there is limited evidence to support this gene-disease relationship. More evidence is needed to support the relationship of MYL2 with AD DCM. This classification was approved by the ClinGen Dilated Cardiomyopathy Working Group on May 16, 2025 (SOP Version 10).

hypertrophic cardiomyopathy 10DEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0012112

Submitter: G2P

hypertrophic cardiomyopathy 10STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0012112

Submitter: Labcorp Genetics (formerly Invitae)

Clinical Genomic Database (CGD)

Cardiomyopathy, familial hypertrophic, 10AD

Manifestation: Cardiovascular; Musculoskeletal

Intervention: Cardiovascular

Rationale: Medical/surgical (ICD) management may ameliorate/prevent severe sequelae

Refs: 8673105; 9535554; 12404107; 21896538; 23365102Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to MYL2 variants in ClinVar

20 Conditions Cataloged
Hypertrophic cardiomyopathy 10Total: 435
CardiomyopathyTotal: 209
Cardiovascular phenotypeTotal: 172
Hypertrophic cardiomyopathyTotal: 166
not providedTotal: 147
not specifiedTotal: 92
MYL2-related disorderTotal: 41
Myopathy, myofibrillar, 12, infantile-onset, with cardiomyopathyTotal: 23

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_000432.4. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
92
clinvar
93
missense
1
clinvar
19
clinvar
253
clinvar
6
clinvar
279
nonsense
2
clinvar
10
clinvar
12
start loss
1
clinvar
1
clinvar
2
frameshift
4
clinvar
26
clinvar
30
splice donor/acceptor (+/-2bp)
7
clinvar
13
clinvar
20
Total133304980436

Highest pathogenic variant AF is 0.00003113042

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 60 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_000432.4RefSeqNP_000423.27MANE Select
ENST00000228841.15EnsemblENSP00000228841.87MANE Select
NM_001406745.1RefSeqNP_001393674.16Standard
NM_001406916.1RefSeqNP_001393845.16Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
myl2bDanio rerio

Structure: heart

Quality: increased size

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Focal adhesion - Homo sapiens (human)
  • Cardiac muscle contraction - Homo sapiens (human)
  • Dilated cardiomyopathy (DCM) - Homo sapiens (human)
  • Tight junction - Homo sapiens (human)
  • Regulation of actin cytoskeleton - Homo sapiens (human)

Biological Process

  • regulation of the force of heart contraction
  • regulation of striated muscle contraction
  • heart development
  • post-embryonic development
  • muscle filament sliding

Molecular Function

  • actin monomer binding
  • calcium ion binding
  • protein binding
  • structural constituent of muscle
  • myosin heavy chain binding

Cellular Component

  • cytosol
  • cytoskeleton
  • actin cytoskeleton
  • myosin complex
  • myofibril

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000228841
Coding exons
7
Length
9904
Individuals with no LoFs
125702
Homozygous LoFs
0
Heterozygous LoFs
46
Defined
125748
p
0.000183
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.3968697.00.8870.000005811123
Missense (PolyPhen)2729.8550.90437398
Synonymous-0.7974437.81.160.00000294281
Loss of Function-0.315119.931.115.17e-7114

Population LoF Frequency

PopulationCAFp-valueStatus
African0.0000620.000062rare
Latino/Admixed American0.000140.00014rare
Ashkenazi Jewish00.0absent
East Asian0.000220.00022rare
Finnish0.0000460.000046rare
European (Non-Finnish)0.000250.00025rare
South Asian0.000230.00023rare
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Contractile protein that plays a role in heart development and function (By similarity). Following phosphorylation, plays a role in cross-bridge cycling kinetics and cardiac muscle contraction by increasing myosin lever arm stiffness and promoting myosin head diffusion; as a consequence of the increase in maximum contraction force and calcium sensitivity of contraction force. These events altogether slow down myosin kinetics and prolong duty cycle resulting in accumulated myosins being cooperatively recruited to actin binding sites to sustain thin filament activation as a means to fine-tune myofilament calcium sensitivity to force (By similarity). During cardiogenesis plays an early role in cardiac contractility by promoting cardiac myofibril assembly (By similarity). {ECO:0000250|UniProtKB:P08733, ECO:0000250|UniProtKB:P51667}.;
Disease
DISEASE: Cardiomyopathy, familial hypertrophic 10 (CMH10) [MIM:608758]: A hereditary heart disorder characterized by ventricular hypertrophy, which is usually asymmetric and often involves the interventricular septum. The symptoms include dyspnea, syncope, collapse, palpitations, and chest pain. They can be readily provoked by exercise. The disorder has inter- and intrafamilial variability ranging from benign to malignant forms with high risk of cardiac failure and sudden cardiac death. Rarely, patients present a variant of familial hypertrophic cardiomyopathy, characterized by mid-left ventricular chamber thickening. {ECO:0000269|PubMed:11102452, ECO:0000269|PubMed:12404107, ECO:0000269|PubMed:12707239, ECO:0000269|PubMed:12818575, ECO:0000269|PubMed:8673105, ECO:0000269|PubMed:9535554}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.273

Intolerance Scores

LoFtool
0.606
RVIS EVS
-0.27
RVIS percentile EVS
33.97

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.809

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumLowMedium
Primary ImmunodeficiencyMediumLowMedium
CancerMediumMediumMedium
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