NAA35

N-alpha-acetyltransferase 35, NatC auxiliary subunit, the group of N-alpha-acetyltransferase subunits

Basic information

Region (hg38): 9:85941145-86025462

Previous symbols: [ "MAK10" ]

Links

ENSG00000135040 ∙ NCBI:60560 ∙ OMIM:619438 ∙ HGNC:24340 ∙ Uniprot:Q5VZE5 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the NAA35 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the NAA35 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous			2	17	3	22
missense			38	4	3	45
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region			4	6	1	11
non coding				19	5	24
Total	0	0	40	40	11

Variants in NAA35

This is a list of pathogenic ClinVar variants found in the NAA35 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
9-85942163-G-A			Uncertain significance (Nov 22, 2022)
9-85942189-C-G			Uncertain significance (Feb 24, 2022)
9-85942225-G-A		not specified	Uncertain significance (May 29, 2024)
9-85942240-A-C			Likely benign (Nov 27, 2023)
9-85942286-G-A			Benign (Jan 09, 2024)
9-85942296-T-C			Benign (Nov 22, 2023)
9-85958498-C-T			Uncertain significance (Feb 19, 2022)
9-85958538-T-G			Likely benign (Apr 14, 2023)
9-85958544-C-G			Uncertain significance (Oct 28, 2022)
9-85958589-A-G			Uncertain significance (Oct 05, 2023)
9-85959797-G-A		not specified	Uncertain significance (Oct 10, 2023)
9-85959835-A-G			Uncertain significance (Jun 16, 2023)
9-85959866-T-G			Likely benign (Jan 09, 2024)
9-85961997-T-C			Likely benign (Dec 19, 2023)
9-85962005-C-A			Likely benign (Jan 12, 2023)
9-85962005-C-G			Likely benign (Aug 11, 2022)
9-85962009-A-G			Likely benign (Jun 29, 2023)
9-85962048-A-G			Likely benign (Nov 28, 2022)
9-85962057-G-A			Likely benign (Jul 08, 2023)
9-85962067-A-G		not specified	Uncertain significance (Jan 24, 2024)
9-85962100-A-G		not specified	Uncertain significance (Dec 09, 2023)
9-85962129-A-G			Likely benign (May 10, 2022)
9-85962190-C-T			Likely benign (May 18, 2022)
9-85962191-G-A			Likely benign (Nov 07, 2023)
9-85975009-A-G		not specified	Uncertain significance (Dec 19, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
NAA35	protein_coding	protein_coding	ENST00000361671	22	81153

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.00	0.00000156	125695	0	4	125699	0.0000159

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	3.66	189	394	0.480	0.0000199	4878
Missense in Polyphen		27	104.74	0.25779		1307
Synonymous	-0.609	134	125	1.07	0.00000662	1237
Loss of Function	6.02	2	46.1	0.0434	0.00000248	545

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000292	0.0000292
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.0000463	0.0000462
European (Non-Finnish)	0.0000178	0.0000176
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Auxillary component of the N-terminal acetyltransferase C (NatC) complex which catalyzes acetylation of N-terminal methionine residues. Involved in regulation of apoptosis and proliferation of smooth muscle cells. {ECO:0000269|PubMed:19398576}.
• Pathway: Vesicle-mediated transport;Membrane Trafficking;Retrograde transport at the Trans-Golgi-Network;Intra-Golgi and retrograde Golgi-to-ER traffic (Consensus)

Recessive Scores

• pRec: 0.112

Intolerance Scores

• rvis_EVS: -0.14
• rvis_percentile_EVS: 43.77

Haploinsufficiency Scores

• pHI: 0.405
• hipred: Y
• hipred_score: 0.853
• ghis: 0.605

Essentials

• essential_gene_CRISPR: E
• essential_gene_CRISPR2: E
• essential_gene_gene_trap: K
• gene_indispensability_pred: N
• gene_indispensability_score: 0.341

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Naa35

Gene ontology

• Biological process: N-terminal protein amino acid acetylation;N-terminal peptidyl-methionine acetylation;negative regulation of apoptotic process;smooth muscle cell proliferation
• Cellular component: cytoplasm;polysome;NatC complex
• Molecular function: peptide alpha-N-acetyltransferase activity;protein binding