NAT14

N-acetyltransferase 14 (putative), the group of GCN5 related N-acetyltransferases

Basic information

Region (hg38): 19:55485188-55487568

Links

ENSG00000090971 ∙ NCBI:57106 ∙ ∙ HGNC:28918 ∙ Uniprot:Q8WUY8 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the NAT14 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the NAT14 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			25			25
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	25	0	0

Variants in NAT14

This is a list of pathogenic ClinVar variants found in the NAT14 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-55485715-C-T		not specified	Uncertain significance (Feb 05, 2025)
19-55485716-C-T		not specified	Uncertain significance (Feb 16, 2023)
19-55485719-G-A		not specified	Uncertain significance (Feb 27, 2024)
19-55485748-G-A		not specified	Uncertain significance (Feb 10, 2022)
19-55486411-G-C		not specified	Uncertain significance (Dec 11, 2024)
19-55486448-C-A		not specified	Uncertain significance (Apr 15, 2024)
19-55486495-G-A		not specified	Uncertain significance (Jul 25, 2023)
19-55486507-G-T		not specified	Uncertain significance (Jul 14, 2023)
19-55486546-T-A		not specified	Uncertain significance (Dec 30, 2024)
19-55486546-T-G		not specified	Uncertain significance (Aug 11, 2024)
19-55486676-C-T		not specified	Uncertain significance (Jan 16, 2025)
19-55486706-G-A		not specified	Uncertain significance (Aug 08, 2023)
19-55486714-C-T		not specified	Uncertain significance (Dec 08, 2024)
19-55486723-G-T		not specified	Uncertain significance (Oct 06, 2024)
19-55486729-C-T		not specified	Uncertain significance (Sep 24, 2024)
19-55486742-G-A		not specified	Uncertain significance (Dec 03, 2021)
19-55486750-G-A		not specified	Uncertain significance (Aug 12, 2021)
19-55486768-G-T		not specified	Uncertain significance (Aug 02, 2021)
19-55486790-G-A		not specified	Uncertain significance (Sep 26, 2024)
19-55486790-G-C		not specified	Uncertain significance (Mar 18, 2024)
19-55486817-C-A		not specified	Uncertain significance (Mar 25, 2024)
19-55486820-G-A		not specified	Uncertain significance (Feb 26, 2024)
19-55486825-C-T		not specified	Uncertain significance (Feb 28, 2023)
19-55486852-G-A		not specified	Uncertain significance (Oct 25, 2022)
19-55486858-G-A		not specified	Uncertain significance (Mar 20, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
NAT14	protein_coding	protein_coding	ENST00000205194	2	2565

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00867	0.591	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.657	79	97.2	0.812	0.00000673	1204
Missense in Polyphen		30	44.95	0.6674		512
Synonymous	0.0302	46	46.3	0.994	0.00000311	496
Loss of Function	0.244	3	3.49	0.859	2.17e-7	40

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Probable acetyltransferase that binds the 5'-GGACTACAG- 3' sequence of coproporphyrinogen oxidase promoter. Able to activate transcription of a reporter construct in vitro.
• Pathway: Metapathway biotransformation Phase I and II (Consensus)

Recessive Scores

• pRec: 0.114

Haploinsufficiency Scores

• pHI: 0.138
• hipred: N
• hipred_score: 0.242

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.159

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Nat14

Gene ontology

• Biological process: DNA-templated transcription, initiation;positive regulation of transcription, DNA-templated
• Cellular component: nucleus;integral component of membrane
• Molecular function: DNA binding;transferase activity, transferring acyl groups