NBPF11

protein-coding

NBPF member 11, the group of NBPF members

Gene summary

Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Jul 2025]

Previous symbols:
  • NBPF24

MANE transcript

NM_001385469.3

Inheritance

—

ClinVar variants

U:1B:4

Top phenotype

—

Max pathogenic AF

—

Genomic locus

chr1:148,102,047-148,152,322

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~50.3 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

No GenCC data available for this gene.

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to NBPF11 variants in ClinVar

2 Conditions Cataloged
not specifiedTotal: 4
not providedTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_001385469.3. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
1
missense
1
clinvar
3
clinvar
4
nonsense
0
start loss
0
frameshift
0
splice donor/acceptor (+/-2bp)
0
Total001405
Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 63 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_001385469.3RefSeqNP_001372398.220MANE Select
ENST00000682118.1EnsemblENSP00000507808.120MANE Select
NM_001101663.5RefSeqNP_001095133.320Standard
NM_001385468.3RefSeqNP_001372397.220Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Cellular Component

  • cytoplasm

dbNSFP Gene Annotations

Source: dbNSFP

Essentials

Indispensability pred.
N
Indispensability score
0.114

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.