NDUFA8

protein-coding

NADH:ubiquinone oxidoreductase subunit A8, the group of NADH:ubiquinone oxidoreductase supernumerary subunits

Gene summary

The protein encoded by this gene belongs to the complex I 19 kDa subunit family. Mammalian complex I is composed of 45 different subunits. This protein has NADH dehydrogenase activity and oxidoreductase activity. It plays an important role in transfering electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Alternative splicing of this gene results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2015]

MANE transcript

NM_014222.3

Inheritance

AR

ClinVar variants

P:3U:33B:2

Top phenotype

Mitochondrial complex I deficiency, nuclear type 37

gnomAD constraint

pLI —, LoF o/e 0.23

Max pathogenic AF

—

Genomic locus

chr9:122,144,058-122,159,779

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~15.7 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

mitochondrial complex I deficiency, nuclear type 37STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0030997

Submitter: G2P

mitochondrial diseaseMODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0044970

Submitter: ClinGen

The relationship between *NDUFA8* and primary mitochondrial disease was evaluated using the ClinGen Clinical Validity Framework as of January 18, 2024. The *NDUFA8* gene encodes NADH-ubiquinone oxidoreductase subunit A8, an accessory subunit of complex I that plays an important role in stabilizing enzyme assembly. *NDUFA8* was first reported in relation to autosomal recessive primary mitochondrial disease in 2020 (PMID: 32385911). Of note, there was a case reported in 2004 (PMID: 15576045) postulating digenic inheritance as an affected individual had a maternally inherited *NDUFA8* missense variant and a paternally inherited *NDUFS2* missense variant; however, no compelling evidence has emerged supporting this mechanism. While various names have been given to the constellation of features seen in those with *NDUFA8*-related disease, pathogenic variants in this gene cause a primary mitochondrial disease. Therefore, the *NDUFA8* phenotype has been lumped into one disease entity according to the ClinGen Lumping and Splitting Framework. Evidence supporting the relationship between *NDUFA8* and autosomal recessive primary mitochondrial disease includes case-level data and experimental data. This curation includes two homozygous missense variants identified in three individuals from two kindreds in two publications (PMIDs: 32385911, 33153867). Age of onset ranged from the first days to months of life to childhood. All reported cases are living. Two affected individuals from one family (PMID: 33153867) had a milder course. One individual had early-onset hypotonia, respiratory distress, status epilepticus/stroke-like episode, and lactic acidosis that generally resolved, as well as brain imaging showing multiple acute infarcts. The other sibling had bradycardia, hypotension and severe pulmonary hypertension with right ventricular dilation after anesthesia, with brain imaging showing mild bilateral cortical atrophy. Both had persistent language delay and mild failure to thrive. The other unrelated affected individual (PMID: 32385911) had a more severe phenotype including severe developmental delay, epilepsy, microcephaly, failure to thrive, with G-tube and respiratory support needed, and brain MRI showed cerebellar atrophy, cerebral atrophy, and thinning of corpus callosum. Muscle biopsies showed complex I deficiency and lab investigations showed elevated lactate, pyruvate, and alanine. The mechanism of disease is loss of function. This gene-disease association is also supported by a biochemical function in mitochondrial complex I shared by more than 10 other genes also associated with primary mitochondrial disease as well as functional alteration in patient cells, rescue, and model systems including knock-out mouse (PMIDs: 33340416, 33153867, 32385911, 27626380, 27626371). In summary, there is moderate evidence to support the relationship between *NDUFA8* and primary mitochondrial disease. While more evidence is needed to establish this relationship definitively, no convincing evidence has emerged that contradicts the gene-disease relationship. This classification was approved by the NICHD/NINDS U24 ClinGen Mitochondrial Disease Gene Curation Expert Panel on January 18, 2024 (SOP Version 10).

mitochondrial complex I deficiency, nuclear type 37MODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0030997

Submitter: PanelApp Australia

mitochondrial complex I deficiency, nuclear type 37LIMITED

Inheritance Pattern: Unknown

Disease ID:MONDO:0030997

Submitter: Labcorp Genetics (formerly Invitae)

Clinical Genomic Database (CGD)

Mitochondrial complex I deficiency, nuclear type 37AR

Manifestation: Biochemical; Neurologic

Intervention: General

Rationale: Genetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testing

Comments: Medical treatment (eg, riboflavin, ubiquinol) may be beneficial; Individuals may have cardiac involvement

Refs: 32385911; 33153867Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to NDUFA8 variants in ClinVar

3 Conditions Cataloged
not specifiedTotal: 29
Mitochondrial complex I deficiency, nuclear type 37Total: 6
not providedTotal: 3

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_014222.3. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
1
missense
2
clinvar
30
clinvar
1
clinvar
33
nonsense
1
clinvar
1
start loss
0
frameshift
1
clinvar
1
splice donor/acceptor (+/-2bp)
2
clinvar
2
Total21332038

Highest pathogenic variant AF is 0.000009293991

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 15 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_014222.3RefSeqNP_055037.14MANE Select
ENST00000373768.4EnsemblENSP00000362873.34MANE Select
NM_001318195.2RefSeqNP_001305124.14Standard
ENST00000886470.1EnsemblENSP00000556529.13Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Retrograde endocannabinoid signaling - Homo sapiens (human)
  • Non-alcoholic fatty liver disease (NAFLD) - Homo sapiens (human)
  • Alzheimer,s disease - Homo sapiens (human)
  • Huntington,s disease - Homo sapiens (human)
  • Thermogenesis - Homo sapiens (human)

Biological Process

  • mitochondrial electron transport, NADH to ubiquinone
  • mitochondrial respiratory chain complex I assembly

Molecular Function

  • NADH dehydrogenase (ubiquinone) activity
  • protein-containing complex binding

Cellular Component

  • mitochondrion
  • mitochondrial inner membrane
  • mitochondrial respiratory chain complex I
  • mitochondrial intermembrane space

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000373768
Coding exons
4
Length
27354
Individuals with no LoFs
125718
Homozygous LoFs
0
Heterozygous LoFs
28
Defined
125746
p
0.000111
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.4818699.50.8640.000006171126
Missense (PolyPhen)2627.6220.94128288
Synonymous0.6343135.80.8650.00000209319
Loss of Function2.1028.700.2304.40e-7109

Population LoF Frequency

PopulationCAFp-valueStatus
African0.0000620.000062rare
Latino/Admixed American0.0000290.000029rare
Ashkenazi Jewish00.0absent
East Asian00.0absent
Finnish00.0absent
European (Non-Finnish)0.000230.00023rare
South Asian00.0absent
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. {ECO:0000269|PubMed:27626371}.;

Recessive Scores

pRec
0.226

Intolerance Scores

LoFtool
0.381
RVIS EVS
-0.23
RVIS percentile EVS
36.86

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
S
Essential (gene trap)
H
Indispensability pred.
E
Indispensability score
0.721

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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