NDUFA8
protein-codingNADH:ubiquinone oxidoreductase subunit A8, the group of NADH:ubiquinone oxidoreductase supernumerary subunits
Gene summary
The protein encoded by this gene belongs to the complex I 19 kDa subunit family. Mammalian complex I is composed of 45 different subunits. This protein has NADH dehydrogenase activity and oxidoreductase activity. It plays an important role in transfering electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Alternative splicing of this gene results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2015]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~15.7 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AR
Disease ID:MONDO:0030997
Submitter: G2P
Inheritance Pattern: AR
Disease ID:MONDO:0044970
Submitter: ClinGen
The relationship between *NDUFA8* and primary mitochondrial disease was evaluated using the ClinGen Clinical Validity Framework as of January 18, 2024. The *NDUFA8* gene encodes NADH-ubiquinone oxidoreductase subunit A8, an accessory subunit of complex I that plays an important role in stabilizing enzyme assembly. *NDUFA8* was first reported in relation to autosomal recessive primary mitochondrial disease in 2020 (PMID: 32385911). Of note, there was a case reported in 2004 (PMID: 15576045) postulating digenic inheritance as an affected individual had a maternally inherited *NDUFA8* missense variant and a paternally inherited *NDUFS2* missense variant; however, no compelling evidence has emerged supporting this mechanism. While various names have been given to the constellation of features seen in those with *NDUFA8*-related disease, pathogenic variants in this gene cause a primary mitochondrial disease. Therefore, the *NDUFA8* phenotype has been lumped into one disease entity according to the ClinGen Lumping and Splitting Framework. Evidence supporting the relationship between *NDUFA8* and autosomal recessive primary mitochondrial disease includes case-level data and experimental data. This curation includes two homozygous missense variants identified in three individuals from two kindreds in two publications (PMIDs: 32385911, 33153867). Age of onset ranged from the first days to months of life to childhood. All reported cases are living. Two affected individuals from one family (PMID: 33153867) had a milder course. One individual had early-onset hypotonia, respiratory distress, status epilepticus/stroke-like episode, and lactic acidosis that generally resolved, as well as brain imaging showing multiple acute infarcts. The other sibling had bradycardia, hypotension and severe pulmonary hypertension with right ventricular dilation after anesthesia, with brain imaging showing mild bilateral cortical atrophy. Both had persistent language delay and mild failure to thrive. The other unrelated affected individual (PMID: 32385911) had a more severe phenotype including severe developmental delay, epilepsy, microcephaly, failure to thrive, with G-tube and respiratory support needed, and brain MRI showed cerebellar atrophy, cerebral atrophy, and thinning of corpus callosum. Muscle biopsies showed complex I deficiency and lab investigations showed elevated lactate, pyruvate, and alanine. The mechanism of disease is loss of function. This gene-disease association is also supported by a biochemical function in mitochondrial complex I shared by more than 10 other genes also associated with primary mitochondrial disease as well as functional alteration in patient cells, rescue, and model systems including knock-out mouse (PMIDs: 33340416, 33153867, 32385911, 27626380, 27626371). In summary, there is moderate evidence to support the relationship between *NDUFA8* and primary mitochondrial disease. While more evidence is needed to establish this relationship definitively, no convincing evidence has emerged that contradicts the gene-disease relationship. This classification was approved by the NICHD/NINDS U24 ClinGen Mitochondrial Disease Gene Curation Expert Panel on January 18, 2024 (SOP Version 10).
Inheritance Pattern: AR
Disease ID:MONDO:0030997
Submitter: PanelApp Australia
Inheritance Pattern: Unknown
Disease ID:MONDO:0030997
Submitter: Labcorp Genetics (formerly Invitae)
Clinical Genomic Database (CGD)
Manifestation: Biochemical; Neurologic
Intervention: General
Rationale: Genetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testing
Comments: Medical treatment (eg, riboflavin, ubiquinol) may be beneficial; Individuals may have cardiac involvement
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to NDUFA8 variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_014222.3. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 1 | 1 | ||||
| missense | 2 | 30 | 1 | 33 | ||
| nonsense | 1 | 1 | ||||
| start loss | 0 | |||||
| frameshift | 1 | 1 | ||||
| splice donor/acceptor (+/-2bp) | 2 | 2 | ||||
| Total | 2 | 1 | 33 | 2 | 0 | 38 |
Highest pathogenic variant AF is 0.000009293991
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_055037.1 | 4 | MANE Select | |
| Ensembl | ENSP00000362873.3 | 4 | MANE Select | |
| RefSeq | NP_001305124.1 | 4 | Standard | |
| Ensembl | ENSP00000556529.1 | 3 | Standard |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Retrograde endocannabinoid signaling - Homo sapiens (human)
- Non-alcoholic fatty liver disease (NAFLD) - Homo sapiens (human)
- Alzheimer,s disease - Homo sapiens (human)
- Huntington,s disease - Homo sapiens (human)
- Thermogenesis - Homo sapiens (human)
Biological Process
- mitochondrial electron transport, NADH to ubiquinone
- mitochondrial respiratory chain complex I assembly
Molecular Function
- NADH dehydrogenase (ubiquinone) activity
- protein-containing complex binding
Cellular Component
- mitochondrion
- mitochondrial inner membrane
- mitochondrial respiratory chain complex I
- mitochondrial intermembrane space
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000373768
- Coding exons
- 4
- Length
- 27354
- Individuals with no LoFs
- 125718
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 28
- Defined
- 125746
- p
- 0.000111
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 0.481 | 86 | 99.5 | 0.864 | 0.00000617 | 1126 |
| Missense (PolyPhen) | 26 | 27.622 | 0.94128 | 288 | ||
| Synonymous | 0.634 | 31 | 35.8 | 0.865 | 0.00000209 | 319 |
| Loss of Function | 2.10 | 2 | 8.70 | 0.230 | 4.40e-7 | 109 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.000062 | 0.000062 | rare |
| Latino/Admixed American | 0.000029 | 0.000029 | rare |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0 | 0.0 | absent |
| Finnish | 0 | 0.0 | absent |
| European (Non-Finnish) | 0.00023 | 0.00023 | rare |
| South Asian | 0 | 0.0 | absent |
| Other | 0 | 0.0 | absent |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. {ECO:0000269|PubMed:27626371}.;
Recessive Scores
- pRec
- 0.226
Intolerance Scores
- LoFtool
- 0.381
- RVIS EVS
- -0.23
- RVIS percentile EVS
- 36.86
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- S
- Essential (gene trap)
- H
- Indispensability pred.
- E
- Indispensability score
- 0.721
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |