NEMP2

nuclear envelope integral membrane protein 2

Basic information

Region (hg38): 2:190504338-190534722

Previous symbols: [ "TMEM194B" ]

Links

ENSG00000189362 ∙ NCBI:100131211 ∙ OMIM:616497 ∙ HGNC:33700 ∙ Uniprot:A6NFY4 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the NEMP2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the NEMP2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			20	1		21
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	20	1	0

Variants in NEMP2

This is a list of pathogenic ClinVar variants found in the NEMP2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-190510382-G-C		not specified	Uncertain significance (Aug 02, 2022)
2-190510407-C-T		not specified	Uncertain significance (Feb 23, 2023)
2-190510467-G-T		not specified	Uncertain significance (Aug 09, 2021)
2-190514472-C-T		not specified	Uncertain significance (Mar 29, 2022)
2-190514579-C-T		not specified	Uncertain significance (May 30, 2024)
2-190514586-T-C		not specified	Uncertain significance (Jul 25, 2023)
2-190516303-A-G		not specified	Uncertain significance (Oct 14, 2023)
2-190516330-C-T		not specified	Uncertain significance (Sep 27, 2021)
2-190516339-C-T		not specified	Uncertain significance (Dec 14, 2021)
2-190516377-G-T		not specified	Uncertain significance (Nov 01, 2022)
2-190517530-A-G		not specified	Uncertain significance (Aug 16, 2022)
2-190517573-C-T		not specified	Likely benign (Dec 19, 2023)
2-190517575-C-G		not specified	Uncertain significance (Oct 26, 2022)
2-190517603-A-T		not specified	Uncertain significance (Jul 06, 2021)
2-190518772-C-G		not specified	Uncertain significance (Apr 08, 2024)
2-190519076-G-C		not specified	Uncertain significance (Aug 12, 2021)
2-190519150-C-T		not specified	Uncertain significance (Apr 07, 2022)
2-190519164-C-G		not specified	Uncertain significance (Oct 27, 2023)
2-190525303-T-G		not specified	Uncertain significance (Apr 23, 2024)
2-190525309-T-C		not specified	Uncertain significance (Feb 27, 2024)
2-190525376-G-A		not specified	Uncertain significance (Oct 03, 2023)
2-190534568-C-G		not specified	Uncertain significance (Apr 19, 2023)
2-190534579-G-A		not specified	Uncertain significance (Jul 26, 2021)
2-190534583-C-T		not specified	Uncertain significance (Aug 17, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
NEMP2	protein_coding	protein_coding	ENST00000409150	9	30381

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
5.67e-7	0.877	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.68	135	202	0.667	0.0000102	2699
Missense in Polyphen		35	56.711	0.61717		793
Synonymous	1.68	57	75.6	0.754	0.00000411	788
Loss of Function	1.58	13	20.8	0.626	0.00000111	270

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Intolerance Scores

• rvis_EVS: 0.21
• rvis_percentile_EVS: 67.72

Haploinsufficiency Scores

• ghis: 0.498

Essentials

• essential_gene_gene_trap: N

Mouse Genome Informatics

• Gene name: Nemp2

Gene ontology

• Cellular component: nuclear envelope;nuclear inner membrane;integral component of membrane