NEURL1B

neuralized E3 ubiquitin protein ligase 1B, the group of MicroRNA protein coding host genes|Ring finger proteins

Basic information

Region (hg38): 5:172641263-172691540

Links

ENSG00000214357 ∙ NCBI:54492 ∙ OMIM:615893 ∙ HGNC:35422 ∙ Uniprot:A8MQ27 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the NEURL1B gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the NEURL1B gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			42	1		43
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	42	1	0

Variants in NEURL1B

This is a list of pathogenic ClinVar variants found in the NEURL1B region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
5-172669824-G-A		not specified	Uncertain significance (Jun 23, 2023)
5-172669835-G-A		not specified	Uncertain significance (Nov 09, 2021)
5-172669842-A-C		not specified	Uncertain significance (Dec 03, 2021)
5-172669845-G-C		not specified	Uncertain significance (Feb 15, 2023)
5-172669851-C-T		not specified	Uncertain significance (Jan 26, 2022)
5-172669995-A-G		not specified	Uncertain significance (Nov 01, 2022)
5-172670034-G-A		not specified	Uncertain significance (Jun 11, 2024)
5-172670060-G-A		not specified	Uncertain significance (Mar 24, 2023)
5-172670100-A-G		not specified	Uncertain significance (May 02, 2024)
5-172670234-G-T		not specified	Uncertain significance (Sep 14, 2023)
5-172670241-C-T		Inborn genetic diseases	Uncertain significance (Oct 13, 2017)
5-172670255-T-A		not specified	Uncertain significance (Oct 03, 2022)
5-172670261-G-T		not specified	Uncertain significance (Nov 22, 2022)
5-172670277-C-T		not specified	Uncertain significance (Sep 13, 2023)
5-172670301-A-G		Inborn genetic diseases	Uncertain significance (Oct 13, 2017)
5-172683427-T-G		not specified	Uncertain significance (Dec 06, 2021)
5-172683436-A-G		not specified	Uncertain significance (Aug 02, 2022)
5-172683443-C-T		not specified	Uncertain significance (Jul 25, 2023)
5-172683494-G-C		not specified	Uncertain significance (Oct 25, 2022)
5-172683541-G-T		not specified	Uncertain significance (Sep 25, 2024)
5-172683592-C-T		not specified	Uncertain significance (Jun 11, 2021)
5-172683599-A-C		not specified	Uncertain significance (Sep 16, 2021)
5-172683613-G-T		not specified	Uncertain significance (Nov 08, 2022)
5-172683620-C-G		not specified	Uncertain significance (Jun 24, 2022)
5-172683659-C-T		not specified	Uncertain significance (Oct 06, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
NEURL1B	protein_coding	protein_coding	ENST00000369800	5	50275

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.709	0.288	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.72	80	184	0.435	0.0000142	3423
Missense in Polyphen		21	70.913	0.29614		1061
Synonymous	3.35	51	91.8	0.555	0.00000810	1234
Loss of Function	2.36	1	8.37	0.120	4.63e-7	152

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: E3 ubiquitin-protein ligase involved in regulation of the Notch pathway through influencing the stability and activity of several Notch ligands. {ECO:0000269|PubMed:19723503}.
• Pathway: Disease;Signal Transduction;Signaling by NOTCH1;Signaling by NOTCH2;NOTCH3 Activation and Transmission of Signal to the Nucleus;Signaling by NOTCH3;Signaling by NOTCH;NOTCH2 Activation and Transmission of Signal to the Nucleus;Constitutive Signaling by NOTCH1 HD Domain Mutants;Signaling by NOTCH1 HD Domain Mutants in Cancer;Constitutive Signaling by NOTCH1 PEST Domain Mutants;Signaling by NOTCH1 PEST Domain Mutants in Cancer;Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants;Signaling by NOTCH1 HD+PEST Domain Mutants in Cancer;Signaling by NOTCH1 in Cancer;Diseases of signal transduction;Activated NOTCH1 Transmits Signal to the Nucleus (Consensus)

Haploinsufficiency Scores

• hipred: Y
• hipred_score: 0.672
• ghis: 0.596

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.282

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Neurl1b

Gene ontology

• Biological process: Notch signaling pathway;protein ubiquitination;ubiquitin-dependent endocytosis
• Cellular component: early endosome
• Molecular function: protein binding;transferase activity;ligase activity;metal ion binding;ubiquitin protein ligase activity