NME8

protein-coding

NME/NM23 family member 8, the group of Dyneins, axonemal outer arm complex subunits|Thioredoxin domain containing |NME/NM23 family

Gene summary

This gene encodes a protein with an N-terminal thioredoxin domain and three C-terminal nucleoside diphosphate kinase (NDK) domains, but the NDK domains are thought to be catalytically inactive. The sea urchin ortholog of this gene encodes a component of sperm outer dynein arms, and the protein is implicated in ciliary function. Mutations in this gene are implicated in primary ciliary dyskinesia type 6.[provided by RefSeq, Nov 2009]

Previous symbols:
  • TXNDC3

MANE transcript

NM_016616.5

Inheritance

AR, AD

ClinVar variants

P:2U:260B:96

Top phenotype

Ciliary dyskinesia, primary, 6

gnomAD constraint

pLI —, LoF o/e 1.03

Max pathogenic AF

—

Genomic locus

chr7:37,848,597-37,900,397

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~51.8 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

primary ciliary dyskinesia 6LIMITED

Inheritance Pattern: AR

Disease ID:MONDO:0012571

Submitter: Labcorp Genetics (formerly Invitae)

primary ciliary dyskinesiaSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0016575

Submitter: Orphanet

primary ciliary dyskinesia 6LIMITED

Inheritance Pattern: AR

Disease ID:MONDO:0012571

Submitter: Ambry Genetics

primary ciliary dyskinesiaNO_KNOWN

Inheritance Pattern: AR

Disease ID:MONDO:0016575

Submitter: ClinGen

NME8 was first reported in relation to autosomal recessive primary ciliary dyskinesia (PCD) in 2007. Duriez et al. described a proband with clinical features consistent with PCD, including chronic respiratory infections with bronchiectasis, chronic sinusitis, serous otitis media, and laterality defects (situs ambiguous with the heart and liver located centrally). Ciliary beat frequency from respiratory epithelial cells was reported as normal, but transmission electron microscopy revealed abnormal ciliary ultrastructure in 66% of respiratory cilia, including shortened or absent outer dynein arms. The proband was compound heterozygous for a rare nonsense variant c.1277T>A (p.Leu426*) and a relatively common intronic variant c.271-27C>T present in approximately 2% of control alleles. Of note, these variants were identified using gene-targeted methods, and no broader genomic analysis was performed to exclude alternative genetic causes (PMID: 17360648). The NME8 gene product has two reported isoforms: a full-length isoform (TXNDC3fl) and a second isoform containing a 117-bp in-frame deletion in exon 7 (TXNDC3d7). Duriez et al. reported that individuals heterozygous for the c.271-27C>T variant exhibit reduced levels of the truncated TXNDC3d7 isoform relative to the full-length TXNDC3fl isoform compared with controls. Functional studies in HeLa cells similarly suggested that this intronic variant alters alternative splicing and results in reduced production of the truncated TXNDC3d7 isoform (PMID: 17360648). The closest paralog, NME9, also produces both a full-length isoform and a truncated isoform lacking exon 5, and previous work demonstrated that the truncated NME9 isoform binds microtubules with higher affinity. Because exon 5 of NME9 shares sequence similarity with exon 7 of NME8, Duriez et al. investigated microtubule binding of the two NME8 isoforms. Both isoforms were capable of binding microtubules, although the truncated TXNDC3d7 isoform showed somewhat higher affinity (PMID: 17360648). These experiments therefore indicate that microtubule interaction is not exclusive to the truncated isoform. Subsequent expression data have raised questions regarding the relevance of NME8 to motile airway cilia. Single-cell RNA sequencing data from the Human Protein Atlas indicate that NME8 expression is not detected in ciliated epithelial cells of the human airway. In addition, a transcriptomic analysis of differentiating human airway epithelial cells performed by Paff et al. (PMID: 29363216) examined the expression of 26 PCD genes before and after ciliogenesis. While most PCD genes were strongly upregulated during differentiation, NME8 was the only gene that showed no detectable expression throughout the experiment. Although there is experimental evidence that NME8 is expressed in tissues containing motile cilia, such as lung and testis (PMID: 23715323), organismal studies in mice and sea urchin indicate that NME8 orthologs are predominantly expressed in sperm. In sea urchin, the ortholog IC1 functions as one of the three intermediate chains of the sperm axoneme and is a component of the sperm outer dynein arm complex (PMID: 8970153; PMID: 12909633). In summary, the initial report suggested a potential relationship between altered NME8 splicing and PCD. However, the genetic evidence is limited to a single report with incomplete genomic investigation, and subsequent expression studies have not demonstrated NME8 expression in human airway ciliated cells. Together, these findings raise substantial uncertainty regarding the role of NME8 in motile airway cilia. Therefore, the gene–disease relationship between NME8 and autosomal recessive primary ciliary dyskinesia is currently considered disputed. This classification was approved by the ClinGen Motile Ciliopathy GCEP on March 12th 2026 (SOP Version 12).

primary ciliary dyskinesia 6LIMITED

Inheritance Pattern: AR

Disease ID:MONDO:0012571

Submitter: PanelApp Australia

Clinical Genomic Database (CGD)

Ciliary dyskinesia, primary, 6AR

Manifestation: Allergy/Immunology/Infectious; Audiologic/Otolaryngologic; Cardiovascular; Gastrointestinal; Pulmonary

Intervention: Allergy/Immunology/Infectious; Audiologic/Otolaryngologic; Cardiovascular; Pulmonary

Rationale: Pulmonary and audiologic surveillance may be beneficial to assess respiratory and hearing function and institute early management measures; In order to facilitate mucus clearance, aggressive interventions (eg, chest percussion and oscillatory vest), as well as vaccinations and early and aggressive treatment of respiratory infections may be beneficial, though measures including lobectomy or lung transplantation may be necessary; The condition can involve congenital cardiac anomalies, and awareness may allow early management

Refs: 17360648; 20301301Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to NME8 variants in ClinVar

5 Conditions Cataloged
Primary ciliary dyskinesia 6Total: 339
Primary ciliary dyskinesiaTotal: 151
not providedTotal: 39
not specifiedTotal: 36
NME8-related disorderTotal: 14

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_016616.5. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
6
clinvar
75
clinvar
81
missense
217
clinvar
18
clinvar
235
nonsense
1
clinvar
17
clinvar
3
clinvar
21
start loss
1
clinvar
1
frameshift
11
clinvar
11
splice donor/acceptor (+/-2bp)
1
clinvar
8
clinvar
9
Total02260960358

Highest pathogenic variant AF is 0.000014347059

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 6 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_016616.5RefSeqNP_057700.315MANE Select
ENST00000199447.9EnsemblENSP00000199447.415MANE Select
ENST00000426106.1EnsemblENSP00000408841.13Standard
ENST00000440017.5EnsemblENSP00000397063.115Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Biological Process

  • multicellular organism development
  • spermatogenesis
  • cell differentiation
  • flagellated sperm motility
  • cellular response to reactive oxygen species

Molecular Function

  • microtubule binding

Cellular Component

  • outer dynein arm
  • sperm principal piece
  • sperm cytoplasmic droplet

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000199447
Coding exons
15
Length
51805
Individuals with no LoFs
125548
Homozygous LoFs
0
Heterozygous LoFs
198
Defined
125746
p
0.000788
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense-0.3763203021.060.00001483909
Missense (PolyPhen)107106.841.00151430
Synonymous-1.431271081.180.000006111011
Loss of Function-0.1884139.71.030.00000246434

Population LoF Frequency

PopulationCAFp-valueStatus
African0.00460.0046notable
Latino/Admixed American0.000870.00087rare
Ashkenazi Jewish0.000300.00030rare
East Asian0.000650.00065rare
Finnish0.000180.00018rare
European (Non-Finnish)0.000460.00046rare
South Asian0.000650.00059rare
Other0.000650.00065rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Probably required during the final stages of sperm tail maturation in the testis and/or epididymis, where extensive disulfide bonding of fibrous sheath (FS) proteins occurs. May be involved in the reduction of disulfide bonds within the sperm FS components. In vitro, it has neither NDP kinase nor reducing activity on disulfide bonds.;
Disease
DISEASE: Ciliary dyskinesia, primary, 6 (CILD6) [MIM:610852]: A disorder characterized by abnormalities of motile cilia. Respiratory infections leading to chronic inflammation and bronchiectasis are recurrent, due to defects in the respiratory cilia; reduced fertility is often observed in male patients due to abnormalities of sperm tails. Half of the patients exhibit randomization of left-right body asymmetry and situs inversus, due to dysfunction of monocilia at the embryonic node. Primary ciliary dyskinesia associated with situs inversus is referred to as Kartagener syndrome. {ECO:0000269|PubMed:17360648}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.107

Intolerance Scores

RVIS EVS
0.47
RVIS percentile EVS
78.8

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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