NRIP3

nuclear receptor interacting protein 3, the group of Peptidase family A28

Basic information

Region (hg38): 11:8965682-9005288

Previous symbols: [ "C11orf14" ]

Links

ENSG00000175352 ∙ NCBI:56675 ∙ OMIM:613125 ∙ HGNC:1167 ∙ Uniprot:Q9NQ35 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the NRIP3 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the NRIP3 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			20			20
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	20	0	0

Variants in NRIP3

This is a list of pathogenic ClinVar variants found in the NRIP3 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-8983896-G-A		not specified	Uncertain significance (Sep 09, 2024)
11-8983924-C-T		not specified	Uncertain significance (Jun 21, 2022)
11-8983964-G-C		not specified	Uncertain significance (Jul 07, 2024)
11-8984076-A-G		not specified	Uncertain significance (Oct 26, 2021)
11-8984108-G-C		not specified	Uncertain significance (Dec 11, 2023)
11-8984110-T-C		not specified	Uncertain significance (Oct 04, 2022)
11-8985782-A-G		not specified	Uncertain significance (Jan 16, 2024)
11-8985794-C-T		not specified	Uncertain significance (Sep 28, 2022)
11-8985800-A-G		not specified	Uncertain significance (Dec 13, 2023)
11-8985833-T-G		not specified	Uncertain significance (Jun 23, 2023)
11-8987549-C-T		not specified	Uncertain significance (Mar 31, 2024)
11-8987588-G-T		not specified	Uncertain significance (Mar 28, 2024)
11-8987591-A-G		not specified	Uncertain significance (Dec 17, 2023)
11-8987627-C-T		not specified	Uncertain significance (Jan 22, 2024)
11-8988186-G-C		not specified	Uncertain significance (Jan 19, 2025)
11-8988215-C-T		not specified	Uncertain significance (Jul 09, 2021)
11-8988250-C-T		not specified	Uncertain significance (Dec 15, 2023)
11-8988251-A-G		not specified	Uncertain significance (Jun 19, 2024)
11-8988257-C-T		not specified	Uncertain significance (Aug 08, 2023)
11-9003785-T-G		not specified	Uncertain significance (Dec 13, 2023)
11-9003808-A-C		not specified	Uncertain significance (Aug 19, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
NRIP3	protein_coding	protein_coding	ENST00000309166	7	23474

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
2.22e-8	0.149	125723	0	24	125747	0.0000954

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.842	96	122	0.786	0.00000624	1548
Missense in Polyphen		24	31.903	0.75227		413
Synonymous	-0.348	50	47.0	1.06	0.00000222	480
Loss of Function	0.113	12	12.4	0.965	6.95e-7	148

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000235	0.000235
Ashkenazi Jewish	0.00	0.00
East Asian	0.000217	0.000217
Finnish	0.00	0.00
European (Non-Finnish)	0.0000616	0.0000527
Middle Eastern	0.000217	0.000217
South Asian	0.000196	0.000196
Other	0.000326	0.000326

dbNSFP

Source: dbNSFP

Intolerance Scores

• loftool: 0.694
• rvis_EVS: 0.15
• rvis_percentile_EVS: 64.32

Haploinsufficiency Scores

• pHI: 0.107
• hipred: N
• hipred_score: 0.355
• ghis: 0.511

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.790

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Nrip3

Gene ontology

• Biological process: proteolysis
• Molecular function: aspartic-type endopeptidase activity;protein binding