NSUN5P2

NSUN5 pseudogene 2

Basic information

Region (hg38): 7:72948485-72954717

Previous symbols: [ "NSUN5C" ]

Links

ENSG00000106133

∙ NCBI:260294 ∙ ∙ HGNC:16609 ∙ Uniprot:Q63ZY6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the NSUN5P2 gene.

not provided (4 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the NSUN5P2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding					4 clinvar	4
Total	0	0	0	0	4

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

Function: FUNCTION: May have S-adenosyl-L-methionine-dependent methyl- transferase activity. {ECO:0000305}.;

Haploinsufficiency Scores

pHI: 0.908
hipred
hipred_score
ghis

Gene ontology

Biological process: rRNA base methylation
Cellular component: nucleolus
Molecular function: RNA binding;methyltransferase activity