NTRK3-AS1

NTRK3 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 15:88252666-88271066

Links

ENSG00000260305 ∙ NCBI:283738 ∙ ∙ HGNC:27532 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the NTRK3-AS1 gene.

• not provided (4 variants)
• Inborn genetic diseases (4 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the NTRK3-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			4	2	2	8
Total	0	0	4	2	2

Variants in NTRK3-AS1

This is a list of pathogenic ClinVar variants found in the NTRK3-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-88255577-C-CA			Benign (Jun 19, 2021)
15-88255581-A-T			Benign (Nov 12, 2018)
15-88256006-C-A		not specified	Uncertain significance (Nov 22, 2023)
15-88256006-C-T		not specified	Uncertain significance (Mar 15, 2024)
15-88256014-C-T		not specified	Uncertain significance (Feb 25, 2025)
15-88256017-C-G		not specified	Uncertain significance (Jan 23, 2025)
15-88256023-T-C		not specified	Uncertain significance (Apr 07, 2023)
15-88256070-G-C			Likely benign (Dec 31, 2019)
15-88256071-G-A		not specified	Uncertain significance (Aug 19, 2024)
15-88256093-C-A		NTRK3-related disorder	Likely benign (Dec 31, 2019)
15-88256113-C-T		not specified	Uncertain significance (Jul 26, 2022)
15-88256154-C-T		NTRK3-related disorder	Likely benign (Mar 06, 2019)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP