OR10G2

olfactory receptor family 10 subfamily G member 2, the group of Olfactory receptors, family 10

Basic information

Region (hg38): 14:21633836-21634940

Links

ENSG00000255582 ∙ NCBI:26534 ∙ ∙ HGNC:8170 ∙ Uniprot:Q8NGC3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR10G2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR10G2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			26	2		28
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	26	2	0

Variants in OR10G2

This is a list of pathogenic ClinVar variants found in the OR10G2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
14-21633932-A-G		not specified	Uncertain significance (Dec 01, 2022)
14-21633952-G-T		not specified	Uncertain significance (Feb 27, 2024)
14-21634088-A-G		not specified	Uncertain significance (Jan 03, 2022)
14-21634121-C-T		not specified	Uncertain significance (Aug 17, 2021)
14-21634145-A-C		not specified	Uncertain significance (Oct 05, 2023)
14-21634175-T-C		not specified	Uncertain significance (Sep 16, 2021)
14-21634176-A-G		not specified	Uncertain significance (Apr 07, 2023)
14-21634182-G-C		not specified	Uncertain significance (Jun 19, 2024)
14-21634257-C-A		not specified	Uncertain significance (Feb 02, 2024)
14-21634266-C-A		not specified	Uncertain significance (Aug 02, 2021)
14-21634335-G-A		not specified	Uncertain significance (Nov 07, 2023)
14-21634374-C-T		not specified	Uncertain significance (Jun 30, 2022)
14-21634377-C-T		not specified	Uncertain significance (May 27, 2022)
14-21634506-C-T		not specified	Uncertain significance (Mar 04, 2024)
14-21634553-A-G		not specified	Uncertain significance (Oct 27, 2022)
14-21634569-G-A		not specified	Uncertain significance (Jun 29, 2023)
14-21634592-G-A		not specified	Uncertain significance (Sep 20, 2023)
14-21634598-G-A		not specified	Likely benign (Jul 26, 2021)
14-21634632-G-A		not specified	Uncertain significance (May 14, 2024)
14-21634659-G-A		not specified	Uncertain significance (Dec 21, 2022)
14-21634712-A-G		not specified	Uncertain significance (Dec 20, 2023)
14-21634724-A-T		not specified	Uncertain significance (Jan 31, 2022)
14-21634734-T-C		not specified	Likely benign (Jun 23, 2023)
14-21634764-G-T		not specified	Uncertain significance (Jan 17, 2023)
14-21634769-G-T		not specified	Uncertain significance (Sep 21, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR10G2	protein_coding	protein_coding	ENST00000542433	1	1105

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00334	0.627	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-1.42	233	179	1.30	0.00000983	1973
Missense in Polyphen		65	55.929	1.1622		703
Synonymous	-0.341	81	77.2	1.05	0.00000445	686
Loss of Function	0.484	4	5.19	0.771	2.16e-7	76

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.0946

Intolerance Scores

• loftool: 0.613
• rvis_EVS: 1.89
• rvis_percentile_EVS: 97.29

Haploinsufficiency Scores

• pHI: 0.136
• hipred: N
• hipred_score: 0.112

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0687

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	High	High	High
Primary Immunodeficiency	High	High	High
Cancer	High	High	High

Mouse Genome Informatics

• Gene name: Olfr1511

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity