OR13G1

olfactory receptor family 13 subfamily G member 1, the group of Olfactory receptors, family 13

Basic information

Region (hg38): 1:247670812-247679739

Links

ENSG00000197437 ∙ NCBI:441933 ∙ OMIM:611677 ∙ HGNC:14999 ∙ Uniprot:Q8NGZ3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR13G1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR13G1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			20	2		22
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	20	2	1

Variants in OR13G1

This is a list of pathogenic ClinVar variants found in the OR13G1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-247672134-G-A		not specified	Uncertain significance (Mar 31, 2023)
1-247672142-C-A		not specified	Uncertain significance (Dec 28, 2023)
1-247672180-T-C		not specified	Uncertain significance (Dec 04, 2024)
1-247672210-C-G		not specified	Uncertain significance (Oct 25, 2023)
1-247672221-A-G		not specified	Uncertain significance (Jun 01, 2023)
1-247672227-G-A		not specified	Uncertain significance (Aug 14, 2024)
1-247672230-A-C		not specified	Uncertain significance (Jun 22, 2023)
1-247672270-G-C		not specified	Uncertain significance (Jun 24, 2022)
1-247672284-A-G		not specified	Uncertain significance (Jan 26, 2023)
1-247672300-A-G		not specified	Uncertain significance (Jun 13, 2023)
1-247672365-C-G		not specified	Uncertain significance (Nov 18, 2023)
1-247672557-C-G		not specified	Uncertain significance (Jul 14, 2024)
1-247672563-A-G		not specified	Uncertain significance (Aug 12, 2021)
1-247672631-C-G		not specified	Uncertain significance (Feb 10, 2022)
1-247672687-G-A		not specified	Uncertain significance (Dec 10, 2024)
1-247672692-T-C		not specified	Uncertain significance (Apr 08, 2024)
1-247672726-C-T		not specified	Uncertain significance (Dec 20, 2023)
1-247672758-A-T		not specified	Uncertain significance (Mar 31, 2024)
1-247672772-T-A			Benign (Mar 29, 2018)
1-247672797-A-G		not specified	Likely benign (Aug 01, 2022)
1-247672809-A-G		not specified	Uncertain significance (Mar 20, 2023)
1-247672839-A-G		not specified	Uncertain significance (Jan 26, 2022)
1-247672849-C-T		not specified	Likely benign (Jul 25, 2023)
1-247672911-A-G		not specified	Uncertain significance (Feb 17, 2022)
1-247672917-A-G		not specified	Uncertain significance (Nov 17, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR13G1	protein_coding	protein_coding	ENST00000359688	1	1046

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.150	0.647	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.341	161	174	0.927	0.00000839	2019
Missense in Polyphen		49	52.353	0.93596		663
Synonymous	-0.455	66	61.5	1.07	0.00000294	623
Loss of Function	0.684	1	2.06	0.486	8.58e-8	29

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.107

Intolerance Scores

• loftool: 0.682
• rvis_EVS: 1.35
• rvis_percentile_EVS: 94.35

Haploinsufficiency Scores

• pHI: 0.225
• hipred: N
• hipred_score: 0.170

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.000309

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	High	High	High
Primary Immunodeficiency	High	High	High
Cancer	High	High	High

Mouse Genome Informatics

• Gene name: Olfr309

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity