OR5AN1

olfactory receptor family 5 subfamily AN member 1, the group of Olfactory receptors, family 5

Basic information

Region (hg38): 11:59358895-59371714

Links

ENSG00000176495 ∙ NCBI:390195 ∙ OMIM:615702 ∙ HGNC:15255 ∙ Uniprot:Q8NGI8 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR5AN1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR5AN1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			15			15
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	15	0	0

Variants in OR5AN1

This is a list of pathogenic ClinVar variants found in the OR5AN1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-59364475-A-G		not specified	Uncertain significance (Nov 29, 2021)
11-59364514-C-T		not specified	Uncertain significance (Mar 21, 2023)
11-59364540-C-A		not specified	Uncertain significance (Jan 30, 2024)
11-59364615-G-C		not specified	Uncertain significance (Jul 26, 2024)
11-59364634-C-T		not specified	Uncertain significance (Nov 08, 2024)
11-59364778-C-T		not specified	Uncertain significance (Oct 24, 2023)
11-59364814-T-C		not specified	Uncertain significance (May 17, 2023)
11-59364861-T-C		not specified	Uncertain significance (Jul 13, 2021)
11-59364937-A-G		not specified	Uncertain significance (Sep 10, 2024)
11-59364960-C-G		not specified	Uncertain significance (Aug 08, 2023)
11-59365017-A-C		not specified	Uncertain significance (Feb 23, 2023)
11-59365017-A-T		not specified	Uncertain significance (Dec 16, 2023)
11-59365036-C-G		not specified	Uncertain significance (Jul 02, 2024)
11-59365050-G-A		not specified	Uncertain significance (Jul 05, 2024)
11-59365108-T-C		not specified	Uncertain significance (Aug 16, 2021)
11-59365114-A-T		not specified	Uncertain significance (Jun 10, 2024)
11-59365134-A-G		not specified	Uncertain significance (Oct 06, 2024)
11-59365162-G-C		not specified	Uncertain significance (May 26, 2024)
11-59365164-T-G		not specified	Uncertain significance (Aug 04, 2023)
11-59365219-C-G		not specified	Uncertain significance (Nov 24, 2024)
11-59365293-T-C		not specified	Uncertain significance (Nov 27, 2024)
11-59365364-A-T		not specified	Uncertain significance (Aug 12, 2022)
11-59365366-A-G		not specified	Uncertain significance (Jun 06, 2022)
11-59365381-G-C		not specified	Uncertain significance (Feb 05, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR5AN1	protein_coding	protein_coding	ENST00000313940	1	1037

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0000593	0.284	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-1.23	205	161	1.27	0.00000715	2038
Missense in Polyphen		48	43.566	1.1018		611
Synonymous	-1.03	69	59.0	1.17	0.00000262	625
Loss of Function	-0.261	6	5.35	1.12	2.22e-7	84

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor involved in the detection of muscone, cyclopentadecanone, cyclopentadecanol, and omega-pentadecalactone (PubMed:24361078, PubMed:25901328). The activity of this receptor is mediated by G proteins which activate adenylyl cyclase (Probable). {ECO:0000269|PubMed:24361078, ECO:0000269|PubMed:25901328, ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.0948

Intolerance Scores

• loftool: 0.764
• rvis_EVS: 0.4
• rvis_percentile_EVS: 76.15

Haploinsufficiency Scores

• pHI: 0.0927
• hipred: N
• hipred_score: 0.112

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.325

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Olfr262

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;sensory perception of smell;detection of chemical stimulus involved in sensory perception;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity;odorant binding