OR5B17

olfactory receptor family 5 subfamily B member 17, the group of Olfactory receptors, family 5

Basic information

Region (hg38): 11:58358124-58359069

Previous symbols: [ "OR5B20P" ]

Links

ENSG00000197786 ∙ NCBI:219965 ∙ ∙ HGNC:15267 ∙ Uniprot:Q8NGF7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR5B17 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR5B17 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			24	1		25
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	24	1	0

Variants in OR5B17

This is a list of pathogenic ClinVar variants found in the OR5B17 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-58358160-C-T		not specified	Uncertain significance (May 16, 2024)
11-58358179-A-C		not specified	Uncertain significance (Feb 21, 2024)
11-58358300-T-C		not specified	Uncertain significance (May 14, 2024)
11-58358319-T-C		not specified	Uncertain significance (Jun 30, 2023)
11-58358336-G-A		not specified	Uncertain significance (Dec 14, 2021)
11-58358367-G-T		not specified	Uncertain significance (Jun 10, 2024)
11-58358400-G-A		not specified	Uncertain significance (Nov 13, 2023)
11-58358427-A-G		not specified	Uncertain significance (Nov 07, 2022)
11-58358478-C-A		not specified	Uncertain significance (Jan 23, 2023)
11-58358516-A-C		not specified	Uncertain significance (Aug 17, 2021)
11-58358561-T-C		not specified	Uncertain significance (May 25, 2022)
11-58358583-G-T		not specified	Likely benign (Aug 09, 2021)
11-58358609-G-T		not specified	Uncertain significance (Sep 25, 2023)
11-58358615-A-C		not specified	Uncertain significance (Sep 13, 2023)
11-58358636-C-A		not specified	Uncertain significance (Sep 29, 2023)
11-58358648-C-G		not specified	Uncertain significance (Nov 09, 2023)
11-58358660-C-T		not specified	Uncertain significance (Oct 12, 2021)
11-58358661-G-A		not specified	Uncertain significance (Jun 26, 2023)
11-58358706-C-T		not specified	Uncertain significance (Oct 25, 2022)
11-58358736-G-C		not specified	Uncertain significance (Jan 26, 2022)
11-58358783-G-C		not specified	Uncertain significance (Feb 15, 2023)
11-58358816-A-G		not specified	Uncertain significance (Jan 29, 2024)
11-58358835-C-G		not specified	Uncertain significance (Dec 22, 2023)
11-58358840-G-A		not specified	Uncertain significance (Jun 10, 2024)
11-58358892-A-G		not specified	Uncertain significance (Apr 25, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR5B17	protein_coding	protein_coding	ENST00000357377	1	946

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.441	0.464	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.748	197	170	1.16	0.00000793	2058
Missense in Polyphen		52	47.374	1.0977		670
Synonymous	-0.832	69	60.8	1.14	0.00000282	644
Loss of Function	1.10	0	1.41	0.00	5.75e-8	24

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Intolerance Scores

• loftool: 0.870
• rvis_EVS: 0.89
• rvis_percentile_EVS: 89.14

Haploinsufficiency Scores

• pHI: 0.0452
• hipred: N
• hipred_score: 0.112

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.00000339

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Olfr1467

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;sensory perception of smell;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity;odorant binding