OR5H15

olfactory receptor family 5 subfamily H member 15, the group of Olfactory receptors, family 5

Basic information

Region (hg38): 3:98166696-98169774

Links

ENSG00000233412 ∙ NCBI:403274 ∙ ∙ HGNC:31287 ∙ Uniprot:A6NDH6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR5H15 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR5H15 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			22	4		26
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	22	4	0

Variants in OR5H15

This is a list of pathogenic ClinVar variants found in the OR5H15 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
3-98168716-C-A		not specified	Uncertain significance (Sep 27, 2022)
3-98168781-T-C		not specified	Uncertain significance (May 29, 2024)
3-98168797-T-C		not specified	Uncertain significance (Oct 03, 2022)
3-98168814-A-G		not specified	Uncertain significance (Jun 10, 2024)
3-98168908-A-G		not specified	Uncertain significance (Jun 07, 2023)
3-98168934-C-T		not specified	Uncertain significance (Dec 28, 2023)
3-98168985-G-C		not specified	Uncertain significance (Jul 19, 2023)
3-98169013-C-T		not specified	Uncertain significance (Sep 27, 2022)
3-98169019-G-C		not specified	Uncertain significance (Jul 13, 2021)
3-98169034-G-A		not specified	Uncertain significance (Jul 11, 2023)
3-98169063-C-T		not specified	Uncertain significance (Feb 11, 2022)
3-98169109-C-T		not specified	Uncertain significance (Dec 28, 2022)
3-98169156-A-C		not specified	Likely benign (Feb 09, 2023)
3-98169179-A-T		not specified	Uncertain significance (Sep 25, 2023)
3-98169207-A-G		not specified	Uncertain significance (Jan 03, 2024)
3-98169220-T-C		not specified	Uncertain significance (Jan 30, 2024)
3-98169288-C-G		not specified	Uncertain significance (Dec 14, 2023)
3-98169297-T-C			Likely benign (Feb 01, 2023)
3-98169348-T-C		not specified	Uncertain significance (Jan 22, 2024)
3-98169357-T-C		not specified	Likely benign (Dec 30, 2023)
3-98169388-C-G		not specified	Uncertain significance (Jun 17, 2024)
3-98169399-G-A		not specified	Likely benign (Sep 20, 2023)
3-98169439-C-G		not specified	Uncertain significance (Jun 06, 2023)
3-98169473-G-A		not specified	Uncertain significance (Jan 06, 2023)
3-98169597-T-G		not specified	Uncertain significance (Apr 19, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR5H15	protein_coding	protein_coding	ENST00000356526	1	942

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000868	0.100	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-1.71	220	159	1.38	0.00000712	2013
Missense in Polyphen		40	35.465	1.1279		501
Synonymous	-2.85	84	56.7	1.48	0.00000252	615
Loss of Function	-1.61	6	2.99	2.01	1.26e-7	41

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity (Consensus)

Intolerance Scores

• loftool: 0.964
• rvis_EVS: 1.98
• rvis_percentile_EVS: 97.61

Haploinsufficiency Scores

• pHI: 0.110
• hipred: N
• hipred_score: 0.112

Essentials

• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.00972

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Olfr183

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;sensory perception of smell;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity;odorant binding