OR6B2

olfactory receptor family 6 subfamily B member 2, the group of Olfactory receptors, family 6

Basic information

Region (hg38): 2:240029491-240030429

Previous symbols: [ "OR6B2P" ]

Links

ENSG00000182083 ∙ NCBI:389090 ∙ ∙ HGNC:15041 ∙ Uniprot:Q6IFH4 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR6B2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR6B2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			24	3	2	29
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	24	4	2

Variants in OR6B2

This is a list of pathogenic ClinVar variants found in the OR6B2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-240029532-C-T		not specified	Uncertain significance (Apr 07, 2022)
2-240029585-G-A		not specified	Uncertain significance (Aug 10, 2021)
2-240029591-A-G		not specified	Uncertain significance (Dec 27, 2023)
2-240029627-T-A			Benign (Aug 16, 2017)
2-240029658-T-C		not specified	Uncertain significance (Jun 22, 2024)
2-240029660-A-G		not specified	Uncertain significance (Jun 10, 2024)
2-240029682-C-T		not specified	Likely benign (Jan 20, 2023)
2-240029732-C-G		not specified	Uncertain significance (Jul 19, 2022)
2-240029734-G-A			Likely benign (Oct 01, 2023)
2-240029774-C-G		not specified	Uncertain significance (Oct 10, 2023)
2-240029775-A-C		not specified	Likely benign (Oct 10, 2023)
2-240029785-T-C		not specified	Uncertain significance (Oct 10, 2023)
2-240029801-G-A		not specified	Uncertain significance (Dec 02, 2021)
2-240029849-G-C		not specified	Uncertain significance (Oct 20, 2023)
2-240029883-G-A		not specified	Uncertain significance (Apr 25, 2022)
2-240029913-C-T		not specified	Uncertain significance (May 17, 2023)
2-240029975-C-G		not specified	Uncertain significance (Sep 01, 2021)
2-240029984-A-G		not specified	Uncertain significance (Mar 26, 2024)
2-240030020-G-A		not specified	Uncertain significance (Dec 27, 2023)
2-240030030-C-T		not specified	Uncertain significance (Jul 20, 2021)
2-240030044-G-T		not specified	Uncertain significance (Jan 10, 2022)
2-240030066-G-A			Benign (Jul 27, 2017)
2-240030069-C-G		not specified	Uncertain significance (Jun 24, 2022)
2-240030076-C-T		not specified	Uncertain significance (Apr 26, 2023)
2-240030099-C-T		not specified	Uncertain significance (Mar 18, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR6B2	protein_coding	protein_coding	ENST00000402971	1	1066

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0220	0.775	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.328	192	180	1.07	0.0000103	2012
Missense in Polyphen		48	46.865	1.0242		605
Synonymous	-1.49	100	82.8	1.21	0.00000536	663
Loss of Function	0.913	3	5.26	0.570	2.25e-7	61

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.0985

Intolerance Scores

• loftool: 0.726
• rvis_EVS: 1.2
• rvis_percentile_EVS: 92.92

Haploinsufficiency Scores

• pHI: 0.138
• hipred: N
• hipred_score: 0.255

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0599

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	High	Medium	High
Cancer	High	High	High

Mouse Genome Informatics

• Gene name: Olfr1416

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;sensory perception of smell;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity;odorant binding