OR6B3

olfactory receptor family 6 subfamily B member 3, the group of Olfactory receptors, family 6

Basic information

Region (hg38): 2:240044570-240053521

Previous symbols: [ "OR6B3P" ]

Links

ENSG00000178586 ∙ NCBI:150681 ∙ ∙ HGNC:15042 ∙ Uniprot:Q8NGW1 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR6B3 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR6B3 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			27	2	1	30
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	27	3	1

Variants in OR6B3

This is a list of pathogenic ClinVar variants found in the OR6B3 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-240045105-T-C		not specified	Uncertain significance (Dec 17, 2023)
2-240045139-C-T		not specified	Likely benign (Sep 01, 2021)
2-240045217-T-C		not specified	Uncertain significance (Mar 02, 2023)
2-240045225-G-A		not specified	Uncertain significance (Jan 03, 2022)
2-240045228-G-T		not specified	Uncertain significance (Jan 04, 2024)
2-240045243-A-C		not specified	Uncertain significance (Jun 27, 2022)
2-240045270-C-T		not specified	Uncertain significance (Feb 27, 2023)
2-240045334-C-T		not specified	Uncertain significance (Feb 06, 2023)
2-240045384-G-A		not specified	Uncertain significance (Mar 17, 2023)
2-240045408-G-T		not specified	Uncertain significance (Mar 28, 2023)
2-240045417-G-C		not specified	Likely benign (Aug 09, 2021)
2-240045418-C-A		not specified	Uncertain significance (Aug 09, 2021)
2-240045432-G-T		not specified	Uncertain significance (May 23, 2023)
2-240045441-A-C		not specified	Uncertain significance (May 14, 2024)
2-240045442-G-A		not specified	Uncertain significance (Oct 10, 2023)
2-240045492-G-T		not specified	Uncertain significance (Sep 09, 2021)
2-240045504-G-A		not specified	Uncertain significance (Aug 31, 2022)
2-240045507-C-A		not specified	Uncertain significance (Dec 19, 2023)
2-240045573-G-A		not specified	Uncertain significance (Aug 22, 2023)
2-240045602-C-A		not specified	Uncertain significance (Aug 12, 2021)
2-240045742-C-T		not specified	Uncertain significance (Dec 02, 2022)
2-240045743-G-A			Likely benign (Jun 22, 2017)
2-240045759-C-G		not specified	Uncertain significance (Mar 29, 2022)
2-240045787-C-T		not specified	Uncertain significance (Oct 22, 2021)
2-240045790-C-T		not specified	Uncertain significance (Mar 29, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR6B3	protein_coding	protein_coding	ENST00000319423	1	996

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000191	0.292	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.0886	189	192	0.982	0.0000112	2154
Missense in Polyphen		49	53.304	0.91926		707
Synonymous	-0.0970	91	89.8	1.01	0.00000602	706
Loss of Function	-0.469	5	3.99	1.25	1.70e-7	46

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.0996

Intolerance Scores

• loftool: 0.630
• rvis_EVS: 0.11
• rvis_percentile_EVS: 61.91

Haploinsufficiency Scores

• pHI: 0.0609
• hipred: N
• hipred_score: 0.187

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.205

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Olfr1414

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;sensory perception of smell;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity;odorant binding