OR7A17

olfactory receptor family 7 subfamily A member 17, the group of Olfactory receptors, family 7

Basic information

Region (hg38): 19:14878203-14886132

Links

ENSG00000185385 ∙ NCBI:26333 ∙ ∙ HGNC:8363 ∙ Uniprot:O14581 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR7A17 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR7A17 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			20			20
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	20	0	0

Variants in OR7A17

This is a list of pathogenic ClinVar variants found in the OR7A17 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-14880448-A-G		not specified	Uncertain significance (May 17, 2023)
19-14880470-C-G		not specified	Uncertain significance (Aug 21, 2023)
19-14880535-G-A		not specified	Uncertain significance (Feb 16, 2023)
19-14880559-T-C		not specified	Uncertain significance (Apr 15, 2024)
19-14880650-T-C		not specified	Uncertain significance (Oct 20, 2023)
19-14880682-A-G		not specified	Uncertain significance (Jan 25, 2024)
19-14880770-C-T		not specified	Uncertain significance (Apr 04, 2024)
19-14880869-C-T		not specified	Uncertain significance (Feb 22, 2023)
19-14880875-A-C		not specified	Uncertain significance (Jul 08, 2022)
19-14880901-G-A		not specified	Uncertain significance (Feb 06, 2024)
19-14880911-A-G		not specified	Uncertain significance (Sep 21, 2023)
19-14880947-T-A		not specified	Uncertain significance (May 07, 2024)
19-14880977-A-T		not specified	Uncertain significance (Sep 01, 2021)
19-14880992-G-A		not specified	Uncertain significance (Jul 22, 2022)
19-14881051-C-G		not specified	Uncertain significance (Mar 24, 2023)
19-14881063-A-G		not specified	Uncertain significance (Oct 05, 2022)
19-14881078-G-A		not specified	Uncertain significance (Feb 16, 2023)
19-14881204-G-A		not specified	Uncertain significance (Sep 17, 2021)
19-14881235-C-T		not specified	Uncertain significance (Dec 06, 2021)
19-14881244-T-C		not specified	Uncertain significance (May 27, 2022)
19-14881283-G-C		not specified	Uncertain significance (Nov 14, 2023)
19-14881295-G-A		not specified	Uncertain significance (Mar 28, 2024)
19-14881333-C-T		not specified	Uncertain significance (Feb 10, 2022)
19-14881352-C-T		not specified	Uncertain significance (Jul 30, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR7A17	protein_coding	protein_coding	ENST00000327462	1	1127

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.316	0.500	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-1.02	196	160	1.23	0.00000740	1997
Missense in Polyphen		39	37.424	1.0421		551
Synonymous	-1.32	77	63.6	1.21	0.00000290	654
Loss of Function	0.526	0	0.323	0.00	1.34e-8	5

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);GPCRs, Other;Olfactory receptor activity;GPCRs, Class A Rhodopsin-like;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Intolerance Scores

• loftool: 0.775
• rvis_EVS: 0.97
• rvis_percentile_EVS: 90.34

Haploinsufficiency Scores

• pHI: 0.0562
• hipred: N
• hipred_score: 0.112

Essentials

• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0582

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	High	High	High
Primary Immunodeficiency	High	High	High
Cancer	High	High	High

Mouse Genome Informatics

• Gene name: Olfr19

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity