OR8D1

olfactory receptor family 8 subfamily D member 1, the group of Olfactory receptors, family 8

Basic information

Region (hg38): 11:124302831-124315099

Previous symbols: [ "OR8D3" ]

Links

ENSG00000196341 ∙ NCBI:283159 ∙ ∙ HGNC:8481 ∙ Uniprot:Q8WZ84 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR8D1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR8D1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			17	1		18
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	17	1	0

Variants in OR8D1

This is a list of pathogenic ClinVar variants found in the OR8D1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-124309853-A-G		not specified	Uncertain significance (Dec 07, 2021)
11-124309928-G-A		not specified	Uncertain significance (Jan 25, 2024)
11-124309943-G-T		not specified	Uncertain significance (Feb 13, 2024)
11-124309980-G-A		not specified	Uncertain significance (Sep 27, 2021)
11-124309991-T-A		not specified	Uncertain significance (Apr 06, 2024)
11-124309995-T-C		not specified	Uncertain significance (May 06, 2022)
11-124310012-A-G		not specified	Uncertain significance (May 31, 2023)
11-124310039-G-A		not specified	Uncertain significance (Dec 27, 2023)
11-124310171-A-G		not specified	Uncertain significance (May 09, 2024)
11-124310181-C-T		not specified	Uncertain significance (May 08, 2024)
11-124310210-T-C		not specified	Uncertain significance (Oct 06, 2021)
11-124310296-C-A		not specified	Uncertain significance (Jun 07, 2024)
11-124310303-G-C		not specified	Uncertain significance (May 15, 2024)
11-124310328-C-T		not specified	Uncertain significance (May 27, 2022)
11-124310376-G-A		not specified	Uncertain significance (Dec 18, 2023)
11-124310466-G-T		not specified	Uncertain significance (Aug 16, 2021)
11-124310474-A-G		not specified	Uncertain significance (Dec 11, 2023)
11-124310492-A-G		not specified	Uncertain significance (Jan 31, 2022)
11-124310559-C-T		not specified	Uncertain significance (Feb 28, 2023)
11-124310573-C-A		not specified	Uncertain significance (Oct 12, 2021)
11-124310594-G-A		not specified	Uncertain significance (Nov 27, 2023)
11-124310747-G-T			Likely benign (Jan 01, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR8D1	protein_coding	protein_coding	ENST00000357821	1	1026

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.446	178	162	1.10	0.00000768	2002
Missense in Polyphen		65	54.179	1.1997		710
Synonymous	1.83	48	67.1	0.715	0.00000328	641
Loss of Function

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish
East Asian
Finnish
European (Non-Finnish)
Middle Eastern
South Asian
Other

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor (Potential). May be involved in taste perception. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.0881

Intolerance Scores

• loftool: 0.806
• rvis_EVS: 1.24
• rvis_percentile_EVS: 93.35

Haploinsufficiency Scores

• pHI: 0.0628
• hipred: N
• hipred_score: 0.146

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.132

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	High	High	High
Primary Immunodeficiency	High	High	High
Cancer	High	High	High

Mouse Genome Informatics

• Gene name: Olfr933

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;sensory perception of smell;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity;odorant binding