OR8D4

olfactory receptor family 8 subfamily D member 4, the group of Olfactory receptors, family 8

Basic information

Region (hg38): 11:123902167-123909229

Links

ENSG00000181518 ∙ NCBI:338662 ∙ ∙ HGNC:14840 ∙ Uniprot:Q8NGM9 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR8D4 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR8D4 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			13	1		14
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	13	1	0

Variants in OR8D4

This is a list of pathogenic ClinVar variants found in the OR8D4 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-123906480-T-G		not specified	Uncertain significance (Nov 16, 2022)
11-123906594-C-T		not specified	Uncertain significance (Oct 01, 2024)
11-123906600-A-T		not specified	Uncertain significance (Sep 02, 2024)
11-123906660-A-T		not specified	Uncertain significance (Feb 06, 2024)
11-123906698-T-A		not specified	Uncertain significance (Jul 27, 2022)
11-123906772-T-C		not specified	Uncertain significance (Jul 10, 2024)
11-123906859-T-C		not specified	Uncertain significance (May 24, 2023)
11-123906870-G-C		not specified	Uncertain significance (Sep 09, 2021)
11-123906892-C-T		not specified	Uncertain significance (Mar 15, 2024)
11-123906900-G-A		not specified	Likely benign (Dec 16, 2023)
11-123906924-A-G		not specified	Uncertain significance (Jan 09, 2024)
11-123907050-A-G		not specified	Uncertain significance (Jun 29, 2022)
11-123907075-T-G		not specified	Uncertain significance (Jul 20, 2021)
11-123907123-A-G		not specified	Uncertain significance (Feb 14, 2023)
11-123907149-A-G		not specified	Uncertain significance (Jun 11, 2024)
11-123907150-C-A		not specified	Uncertain significance (Dec 07, 2024)
11-123907174-T-G		not specified	Uncertain significance (Mar 01, 2023)
11-123907203-A-G		not specified	Uncertain significance (Feb 13, 2023)
11-123907225-G-C		not specified	Uncertain significance (Oct 25, 2024)
11-123907297-T-C		not specified	Uncertain significance (Aug 14, 2024)
11-123907369-C-A		not specified	Uncertain significance (Sep 14, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR8D4	protein_coding	protein_coding	ENST00000321355	1	1075

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.123	0.788	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.298	173	162	1.07	0.00000769	2028
Missense in Polyphen		60	50.186	1.1956		690
Synonymous	-0.471	64	59.4	1.08	0.00000279	645
Loss of Function	1.36	2	5.41	0.370	2.25e-7	96

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.0768

Intolerance Scores

• loftool: 0.788
• rvis_EVS: 2.86
• rvis_percentile_EVS: 99.13

Haploinsufficiency Scores

• pHI: 0.0370
• hipred: N
• hipred_score: 0.170

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0360

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	High	High	High
Primary Immunodeficiency	High	High	High
Cancer	High	High	High

Mouse Genome Informatics

• Gene name: Olfr985

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;sensory perception of smell;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity;odorant binding