OR9Q2

olfactory receptor family 9 subfamily Q member 2, the group of Olfactory receptors, family 9

Basic information

Region (hg38): 11:58189070-58194053

Previous symbols: [ "OR9Q2P" ]

Links

ENSG00000186513 ∙ NCBI:219957 ∙ ∙ HGNC:15328 ∙ Uniprot:Q8NGE9 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the OR9Q2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the OR9Q2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			26			26
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	26	0	0

Variants in OR9Q2

This is a list of pathogenic ClinVar variants found in the OR9Q2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-58190512-G-T		not specified	Uncertain significance (Mar 20, 2023)
11-58190555-A-T		not specified	Uncertain significance (Nov 07, 2022)
11-58190557-T-C		not specified	Uncertain significance (Apr 12, 2022)
11-58190586-G-T		not specified	Uncertain significance (Apr 13, 2022)
11-58190593-T-C		not specified	Uncertain significance (Apr 04, 2023)
11-58190611-G-A		not specified	Uncertain significance (Mar 31, 2023)
11-58190645-A-G		not specified	Uncertain significance (Sep 13, 2023)
11-58190650-C-T		not specified	Uncertain significance (Apr 25, 2023)
11-58190656-C-T		not specified	Uncertain significance (Aug 02, 2021)
11-58190683-C-T		not specified	Uncertain significance (Jan 22, 2024)
11-58190711-C-T		not specified	Uncertain significance (Aug 23, 2021)
11-58190720-T-C		not specified	Uncertain significance (Feb 23, 2023)
11-58190776-C-T		not specified	Uncertain significance (Mar 01, 2024)
11-58190791-T-C		not specified	Uncertain significance (Aug 26, 2022)
11-58190962-G-C		not specified	Uncertain significance (Feb 27, 2023)
11-58191009-G-T		not specified	Uncertain significance (Mar 13, 2023)
11-58191065-G-T		not specified	Uncertain significance (Jan 03, 2024)
11-58191071-C-T		not specified	Uncertain significance (Feb 15, 2023)
11-58191112-C-T		not specified	Uncertain significance (Mar 07, 2023)
11-58191132-C-G		not specified	Uncertain significance (Jul 14, 2022)
11-58191137-T-C		not specified	Uncertain significance (Jun 18, 2021)
11-58191163-A-C		not specified	Uncertain significance (Dec 20, 2023)
11-58191214-G-A		not specified	Uncertain significance (Jan 29, 2024)
11-58191224-T-C		not specified	Uncertain significance (May 10, 2024)
11-58191256-A-G		not specified	Uncertain significance (Aug 02, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
OR9Q2	protein_coding	protein_coding	ENST00000311591	1	1085

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
6.16e-9	0.0382	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.126	189	184	1.03	0.0000111	2044
Missense in Polyphen		70	61.364	1.1407		779
Synonymous	-1.20	88	74.8	1.18	0.00000479	673
Loss of Function	-0.894	11	8.23	1.34	5.93e-7	73

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Odorant receptor. {ECO:0000305}.
• Pathway: Olfactory transduction - Homo sapiens (human);Olfactory receptor activity;Signaling by GPCR;Signal Transduction;Olfactory Signaling Pathway;G alpha (s) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.0821

Intolerance Scores

• loftool: 0.815
• rvis_EVS: -0.07
• rvis_percentile_EVS: 48.35

Haploinsufficiency Scores

• pHI: 0.0492
• hipred: N
• hipred_score: 0.131

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.000235

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Olfr1497

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;sensory perception of smell;detection of chemical stimulus involved in sensory perception of smell
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;olfactory receptor activity;odorant binding