P2RY10

P2Y receptor family member 10, the group of G protein-coupled receptors, Class A orphans

Basic information

Region (hg38): X:78945332-78963727

Links

ENSG00000078589 ∙ NCBI:27334 ∙ OMIM:300529 ∙ HGNC:19906 ∙ Uniprot:O00398 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the P2RY10 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the P2RY10 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1	1	2
missense			13			13
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	13	1	1

Variants in P2RY10

This is a list of pathogenic ClinVar variants found in the P2RY10 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
X-78960572-A-G		not specified	Uncertain significance (Mar 15, 2024)
X-78960573-C-A		not specified	Uncertain significance (Jan 09, 2024)
X-78960608-G-C		not specified	Uncertain significance (Dec 06, 2021)
X-78960788-C-T		not specified	Uncertain significance (Jul 27, 2024)
X-78960830-G-A		not specified	Uncertain significance (Dec 13, 2022)
X-78960870-T-C		not specified	Uncertain significance (May 02, 2024)
X-78960916-C-T			Benign (May 15, 2018)
X-78960940-G-A			Likely benign (Nov 01, 2022)
X-78960968-G-C		not specified	Uncertain significance (May 10, 2024)
X-78960995-G-T		not specified	Uncertain significance (Sep 16, 2021)
X-78961050-A-G		not specified	Uncertain significance (Nov 30, 2022)
X-78961163-G-T		not specified	Uncertain significance (Dec 07, 2024)
X-78961223-A-T		not specified	Uncertain significance (Feb 18, 2025)
X-78961269-C-T		not specified	Uncertain significance (Sep 24, 2024)
X-78961310-A-G		not specified	Uncertain significance (Aug 10, 2021)
X-78961430-C-T		not specified	Uncertain significance (Jan 12, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
P2RY10	protein_coding	protein_coding	ENST00000171757	1	16623

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.155	0.782	125513	2	1	125516	0.0000120

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.36	90	134	0.670	0.0000101	2257
Missense in Polyphen		5	31.447	0.159		641
Synonymous	-0.196	51	49.2	1.04	0.00000370	657
Loss of Function	1.53	2	6.05	0.331	4.53e-7	112

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000365	0.0000365
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.000126	0.0000924
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Putative receptor for purines coupled to G-proteins.
• Pathway: Neuroactive ligand-receptor interaction - Homo sapiens (human);GPCRs, Class A Rhodopsin-like;Signaling by GPCR;Signal Transduction;P2Y receptors;Nucleotide-like (purinergic) receptors;Class A/1 (Rhodopsin-like receptors);GPCR ligand binding;G alpha (q) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.113

Intolerance Scores

• loftool: 0.149
• rvis_EVS: -0.01
• rvis_percentile_EVS: 53.19

Haploinsufficiency Scores

• pHI: 0.334
• hipred: N
• hipred_score: 0.432
• ghis: 0.569

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: P2ry10

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;positive regulation of Rho protein signal transduction;G protein-coupled purinergic nucleotide receptor signaling pathway;positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway
• Cellular component: plasma membrane;integral component of plasma membrane
• Molecular function: G protein-coupled receptor activity;G protein-coupled purinergic nucleotide receptor activity