PHC2-AS1

PHC2 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 1:33350022-33363247

Links

ENSG00000233246 ∙ NCBI:101929464 ∙ ∙ HGNC:40205 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the PHC2-AS1 gene.

• Inborn genetic diseases (9 variants)
• not provided (4 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the PHC2-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			9	2	2	13
Total	0	0	9	2	2

Variants in PHC2-AS1

This is a list of pathogenic ClinVar variants found in the PHC2-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-33354407-C-A		not specified	Uncertain significance (Nov 09, 2022)
1-33354410-G-A		not specified	Uncertain significance (Aug 16, 2022)
1-33354415-G-A			Likely benign (Jun 19, 2018)
1-33354433-G-A		not specified	Uncertain significance (Jun 01, 2023)
1-33354472-G-T		not specified	Uncertain significance (Nov 09, 2022)
1-33354500-G-A		not specified	Uncertain significance (Dec 14, 2023)
1-33354502-G-A		not specified	Uncertain significance (May 03, 2023)
1-33354550-G-T		not specified	Uncertain significance (May 20, 2024)
1-33354843-G-A		not specified	Uncertain significance (Jun 11, 2024)
1-33354848-G-A		not specified	Uncertain significance (Jun 11, 2024)
1-33354861-G-C		not specified	Uncertain significance (Aug 20, 2024)
1-33354861-G-T		not specified	Uncertain significance (Aug 12, 2021)
1-33354894-G-A		not specified	Uncertain significance (Nov 26, 2024)
1-33354914-C-G		not specified	Uncertain significance (Feb 15, 2023)
1-33354919-G-A			Benign (Jun 19, 2018)
1-33354985-G-C		not specified	Uncertain significance (Jul 31, 2024)
1-33355031-G-A		not specified	Uncertain significance (Aug 23, 2021)
1-33355074-C-T		not specified	Uncertain significance (May 30, 2023)
1-33355130-C-T			Benign (Jan 25, 2018)
1-33355252-G-A			Likely benign (Dec 01, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP