PNISR

PNN interacting serine and arginine rich protein

Basic information

Region (hg38): 6:99397629-99425331

Previous symbols: [ "C6orf111", "SFRS18" ]

Links

ENSG00000132424 ∙ NCBI:25957 ∙ OMIM:616653 ∙ HGNC:21222 ∙ Uniprot:Q8TF01 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the PNISR gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the PNISR gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			52	1		53
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	52	2	0

Variants in PNISR

This is a list of pathogenic ClinVar variants found in the PNISR region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-99400599-A-G		not specified	Uncertain significance (Jan 24, 2025)
6-99400608-C-T		not specified	Likely benign (Mar 05, 2024)
6-99400613-C-T		not specified	Uncertain significance (Jul 21, 2024)
6-99400619-C-T		not specified	Uncertain significance (Dec 20, 2023)
6-99400698-A-G		not specified	Uncertain significance (Apr 15, 2024)
6-99400754-T-G		not specified	Uncertain significance (Jan 23, 2025)
6-99400762-T-C		not specified	Uncertain significance (Feb 16, 2023)
6-99400763-A-C		not specified	Uncertain significance (Nov 12, 2024)
6-99400764-T-C		not specified	Uncertain significance (Feb 01, 2025)
6-99400781-G-C		not specified	Uncertain significance (Jul 26, 2022)
6-99400825-T-A		not specified	Uncertain significance (Oct 06, 2021)
6-99400894-C-G		not specified	Uncertain significance (Mar 19, 2024)
6-99400907-C-T		not specified	Uncertain significance (Mar 14, 2023)
6-99400947-G-C		not specified	Uncertain significance (Aug 26, 2022)
6-99400968-C-T		not specified	Uncertain significance (Jun 03, 2022)
6-99401022-G-A		not specified	Uncertain significance (Jan 24, 2023)
6-99401039-C-T		not specified	Uncertain significance (Aug 12, 2021)
6-99401069-C-T		not specified	Uncertain significance (Jan 23, 2025)
6-99401085-C-T		not specified	Uncertain significance (Oct 01, 2024)
6-99401094-G-T		not specified	Uncertain significance (May 05, 2023)
6-99401108-C-T		not specified	Uncertain significance (Jan 23, 2024)
6-99401132-T-C		not specified	Uncertain significance (May 08, 2023)
6-99401133-T-C		not specified	Uncertain significance (Mar 07, 2024)
6-99401168-G-C		not specified	Uncertain significance (Jul 15, 2021)
6-99401204-T-C		not specified	Uncertain significance (Sep 01, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
PNISR	protein_coding	protein_coding	ENST00000369239	10	27281

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.00	0.0000207	125723	0	19	125742	0.0000756

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.61	355	452	0.786	0.0000250	5383
Missense in Polyphen		71	116.74	0.60819		1337
Synonymous	-0.565	146	138	1.06	0.00000664	1428
Loss of Function	5.70	3	43.6	0.0688	0.00000266	466

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000591	0.0000591
Ashkenazi Jewish	0.00	0.00
East Asian	0.000226	0.000217
Finnish	0.0000468	0.0000462
European (Non-Finnish)	0.0000822	0.0000791
Middle Eastern	0.000226	0.000217
South Asian	0.0000693	0.0000653
Other	0.000164	0.000163

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.110

Intolerance Scores

• rvis_EVS: 0.07
• rvis_percentile_EVS: 59.04

Haploinsufficiency Scores

• pHI: 0.960
• hipred: Y
• hipred_score: 0.696
• ghis: 0.644

Essentials

• essential_gene_CRISPR: E
• essential_gene_CRISPR2: E
• essential_gene_gene_trap: E
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Pnisr

Gene ontology

• Cellular component: cytosol;nuclear speck
• Molecular function: RNA binding